(30 nodes) Midbody network (Drosophila simulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD25467	GD25467. (1310 aa)
	DsimGD12886	GD12886. (338 aa)
	pav	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (928 aa)
	DsimGD13264	GD13264. (631 aa)
	DsimGD14871	GD14871. (558 aa)
	DsimGD16184	GD16184. (1151 aa)
	DsimGD18753	GD18753. (813 aa)
	DsimGD20723	GD20723. (4013 aa)
	DsimGD18063	GD18063. (836 aa)
	DsimGD19377	GD19377. (494 aa)
	DsimGD21548	GD21548. (892 aa)
	DsimGD16432	GD16432. (379 aa)
	DsimGD16479	GD16479. (92 aa)
	DsimGD15346	GD15346. (719 aa)
	DsimGD15348	GD15348. (603 aa)
	DsimGD15349	GD15349. (61 aa)
	DsimGD17557	GD17557. (107 aa)
	DsimGD24679	GD24679. (313 aa)
	DsimGD22523	Small ubiquitin-related modifier. (90 aa)
	DsimGD23208	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (335 aa)
	DsimGD22216	GD22216; Belongs to the protein kinase superfamily. (329 aa)
	DsimGD24245	GD24245. (466 aa)
	DsimGD25469	GD25469. (355 aa)
	DsimGD10849	GD10849; Belongs to the calmodulin family. (149 aa)
	DsimGD10494	GD10494. (930 aa)
	DsimGD14485	GD14485. (66 aa)
	DsimGD14486	GD14486. (98 aa)
	DsimGD13060	GD13060. (141 aa)
	DsimGD12055	GD12055. (306 aa)
	DsimGD13436	GD13436. (152 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsimGD10494	DsimGD21548	B4QEP6	B4R2A2	GD10494.	GD21548.	0.636
DsimGD10494	DsimGD22216	B4QEP6	B4Q9V4	GD10494.	GD22216; Belongs to the protein kinase superfamily.	0.764
DsimGD10494	DsimGD24245	B4QEP6	B4QAH3	GD10494.	GD24245.	0.502
DsimGD10494	pav	B4QEP6	B4QQI5	GD10494.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.868
DsimGD10849	DsimGD23208	B4QC96	B4Q933	GD10849; Belongs to the calmodulin family.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.518
DsimGD13264	DsimGD19377	B4QQK5	B4R1R2	GD13264.	GD19377.	0.661
DsimGD14871	DsimGD16184	B4QRW6	B4QTB6	GD14871.	GD16184.	0.956
DsimGD14871	DsimGD20723	B4QRW6	B4QV85	GD14871.	GD20723.	0.687
DsimGD14871	DsimGD22216	B4QRW6	B4Q9V4	GD14871.	GD22216; Belongs to the protein kinase superfamily.	0.937
DsimGD14871	DsimGD22523	B4QRW6	B4Q5A6	GD14871.	Small ubiquitin-related modifier.	0.563
DsimGD14871	DsimGD23208	B4QRW6	B4Q933	GD14871.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.529
DsimGD14871	pav	B4QRW6	B4QQI5	GD14871.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.983
DsimGD15346	DsimGD21548	B4NS48	B4R2A2	GD15346.	GD21548.	0.636
DsimGD15346	DsimGD22216	B4NS48	B4Q9V4	GD15346.	GD22216; Belongs to the protein kinase superfamily.	0.764
DsimGD15346	DsimGD24245	B4NS48	B4QAH3	GD15346.	GD24245.	0.502
DsimGD15346	pav	B4NS48	B4QQI5	GD15346.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.868
DsimGD15348	DsimGD21548	B4NS49	B4R2A2	GD15348.	GD21548.	0.636
DsimGD15348	DsimGD22216	B4NS49	B4Q9V4	GD15348.	GD22216; Belongs to the protein kinase superfamily.	0.764
DsimGD15348	DsimGD24245	B4NS49	B4QAH3	GD15348.	GD24245.	0.502
DsimGD15348	pav	B4NS49	B4QQI5	GD15348.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.868