(43 nodes) Pentose and glucuronate interconversions network (Drosophila simulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD11964	GD11964. (418 aa)
	DsimGD24495	GD24495. (153 aa)
	DsimGD24467	GD24467. (242 aa)
	DsimGD23396	GD23396. (533 aa)
	DsimGD23454	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (502 aa)
	DsimGD23045	GD23045. (572 aa)
	DsimGD24083	GD24083. (523 aa)
	DsimGD24084	GD24084. (539 aa)
	DsimGD22840	GD22840. (335 aa)
	DsimGD24158	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (440 aa)
	DsimGD24159	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (519 aa)
	DsimGD24160	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (518 aa)
	DsimGD23245	GD23245. (536 aa)
	DsimGD21706	GD21706. (522 aa)
	DsimGD10303	GD10303. (311 aa)
	DsimGD25338	Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family. (670 aa)
	DsimGD10239	Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (221 aa)
	DsimGD25218	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (492 aa)
	DsimGD11066	GD11066. (315 aa)
	DsimGD25217	GD25217. (340 aa)
	DsimGD25117	GD25117. (488 aa)
	DsimGD25513	GD25513. (477 aa)
	DsimGD13103	UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (476 aa)
	DsimGD12937	UTP--glucose-1-phosphate uridylyltransferase. (531 aa)
	DsimGD13309	GD13309. (320 aa)
	DsimGD13308	GD13308. (316 aa)
	DsimGD12789	GD12789. (350 aa)
	DsimGD12788	GD12788. (320 aa)
	DsimGD12307	GD12307. (636 aa)
	DsimGD18859	GD18859. (164 aa)
	DsimGD16447	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (522 aa)
	DsimGD18734	GD18734; Belongs to the UDP-glycosyltransferase family. (544 aa)
	DsimGD20680	GD20680. (540 aa)
	DsimGD20681	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (535 aa)
	DsimGD20682	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (408 aa)
	DsimGD20683	GD20683. (295 aa)
	DsimGD20684	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (526 aa)
	DsimGD20686	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (517 aa)
	DsimGD18723	GD18723. (360 aa)
	DsimGD19126	GD19126. (405 aa)
	DsimGD19902	GD19902. (360 aa)
	DsimGD19441	GD19441. (329 aa)
	DsimGD19978	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (332 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsimGD10239	DsimGD19126	B4QEP0	B4QWD8	Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	GD19126.	0.938
DsimGD10239	DsimGD23045	B4QEP0	B4Q6J3	Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	GD23045.	0.938
DsimGD10303	DsimGD11964	B4QDC7	B4NRZ8	GD10303.	GD11964.	0.915
DsimGD10303	DsimGD18723	B4QDC7	B4QUM4	GD10303.	GD18723.	0.926
DsimGD10303	DsimGD19902	B4QDC7	B4QYY8	GD10303.	GD19902.	0.926
DsimGD10303	DsimGD22840	B4QDC7	B4Q833	GD10303.	GD22840.	0.915
DsimGD10303	DsimGD24467	B4QDC7	B4NUP0	GD10303.	GD24467.	0.938
DsimGD11066	DsimGD19441	B4QFW6	B4R0C7	GD11066.	GD19441.	0.914
DsimGD11066	DsimGD24495	B4QFW6	B4NUI7	GD11066.	GD24495.	0.903
DsimGD11964	DsimGD10303	B4NRZ8	B4QDC7	GD11964.	GD10303.	0.915
DsimGD11964	DsimGD12788	B4NRZ8	B4QQ86	GD11964.	GD12788.	0.915
DsimGD11964	DsimGD12789	B4NRZ8	B4QQ85	GD11964.	GD12789.	0.915
DsimGD11964	DsimGD13308	B4NRZ8	B4QQ07	GD11964.	GD13308.	0.915
DsimGD11964	DsimGD13309	B4NRZ8	B4QQ06	GD11964.	GD13309.	0.915
DsimGD11964	DsimGD18723	B4NRZ8	B4QUM4	GD11964.	GD18723.	0.498
DsimGD11964	DsimGD19902	B4NRZ8	B4QYY8	GD11964.	GD19902.	0.498
DsimGD11964	DsimGD22840	B4NRZ8	B4Q833	GD11964.	GD22840.	0.907
DsimGD12307	DsimGD13103	B4QQC2	B4QJV3	GD12307.	UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	0.664
DsimGD12307	DsimGD25338	B4QQC2	B4QDL7	GD12307.	Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.	0.655
DsimGD12788	DsimGD11964	B4QQ86	B4NRZ8	GD12788.	GD11964.	0.915