49 items (Drosophila virilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DvirGJ13396	Uncharacterized protein. (1073 aa)
	DvirGJ11948	Peptidase_M24 domain-containing protein. (394 aa)
	DvirGJ12560	Brix domain-containing protein. (351 aa)
	DvirGJ11797	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (441 aa)
	DvirGJ12069	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (347 aa)
	DvirGJ20890	Uncharacterized protein. (419 aa)
	eIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	GJ22246	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (780 aa)
	DvirGJ21693	Uncharacterized protein; Belongs to the DEAD box helicase family. (784 aa)
	DvirGJ19965	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (259 aa)
	DvirGJ21111	Uncharacterized protein. (671 aa)
	DvirGJ21110	Uncharacterized protein. (215 aa)
	DvirGJ21798	WD_REPEATS_REGION domain-containing protein. (456 aa)
	DvirGJ21808	Uncharacterized protein. (819 aa)
	DvirGJ21086	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (652 aa)
	DvirGJ22462	WD_REPEATS_REGION domain-containing protein. (569 aa)
	DvirGJ20899	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (682 aa)
	GJ14807	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (633 aa)
	DvirGJ21832	Uncharacterized protein. (259 aa)
	GJ17641	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (419 aa)
	DvirGJ20668	Brix domain-containing protein. (395 aa)
	DvirGJ19693	WD_REPEATS_REGION domain-containing protein. (488 aa)
	DvirGJ17811	Uncharacterized protein. (755 aa)
	DvirGJ23588	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	DvirGJ23500	Brix domain-containing protein. (415 aa)
	DvirGJ23450	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (829 aa)
	DvirGJ23794	TRASH domain-containing protein. (191 aa)
	DvirGJ23196	Uncharacterized protein. (439 aa)
	DvirGJ23143	Uncharacterized protein, isoform A; Belongs to the DEAD box helicase family. (670 aa)
	DvirGJ22554	Uncharacterized protein. (271 aa)
	DvirGJ22542	Brix domain-containing protein. (314 aa)
	DvirGJ23050	RRM domain-containing protein. (366 aa)
	DvirGJ18881	Uncharacterized protein, isoform A. (1404 aa)
	DvirGJ19196	CP-type G domain-containing protein. (611 aa)
	DvirGJ10246	Nucleolar complex protein 3 homolog. (825 aa)
	DvirGJ10181	SURF6 domain-containing protein. (330 aa)
	DvirGJ10591	CP-type G domain-containing protein. (581 aa)
	DvirGJ10510	Uncharacterized protein. (307 aa)
	DvirGJ16454	C2H2-type domain-containing protein. (165 aa)
	DvirGJ18198	Uncharacterized protein. (573 aa)
	DvirGJ18264	Uncharacterized protein. (681 aa)
	DvirGJ15765	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (525 aa)
	DvirGJ15847	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (831 aa)
	DvirGJ15890	Uncharacterized protein. (403 aa)
	DvirGJ15568	Uncharacterized protein. (564 aa)
	DvirGJ15324	PUM-HD domain-containing protein. (672 aa)
	DvirGJ15389	Protein MAK16 homolog; Belongs to the MAK16 family. (348 aa)
	DvirGJ18081	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (840 aa)
	DvirGJ17587	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (718 aa)

Your Current Organism:

Drosophila virilis

NCBI taxonomy Id: 7244
Other names: D. virilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DvirGJ10181	DvirGJ10246	B4M4S6	B4M4F6	SURF6 domain-containing protein.	Nucleolar complex protein 3 homolog.	0.540
DvirGJ10181	DvirGJ10510	B4M4S6	B4M5U9	SURF6 domain-containing protein.	Uncharacterized protein.	0.982
DvirGJ10181	DvirGJ10591	B4M4S6	B4M5J2	SURF6 domain-containing protein.	CP-type G domain-containing protein.	0.909
DvirGJ10181	DvirGJ11797	B4M4S6	B4LDP6	SURF6 domain-containing protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.712
DvirGJ10181	DvirGJ12069	B4M4S6	B4LH49	SURF6 domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.884
DvirGJ10181	DvirGJ12560	B4M4S6	B4LBQ6	SURF6 domain-containing protein.	Brix domain-containing protein.	0.967
DvirGJ10181	DvirGJ13396	B4M4S6	B4LBB8	SURF6 domain-containing protein.	Uncharacterized protein.	0.871
DvirGJ10181	DvirGJ15324	B4M4S6	B4MCX2	SURF6 domain-containing protein.	PUM-HD domain-containing protein.	0.741
DvirGJ10181	DvirGJ15389	B4M4S6	B4MD95	SURF6 domain-containing protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.967
DvirGJ10181	DvirGJ15568	B4M4S6	B4MB01	SURF6 domain-containing protein.	Uncharacterized protein.	0.722
DvirGJ10181	DvirGJ15847	B4M4S6	B4MA57	SURF6 domain-containing protein.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.886
DvirGJ10181	DvirGJ16454	B4M4S6	B4M7G5	SURF6 domain-containing protein.	C2H2-type domain-containing protein.	0.617
DvirGJ10181	DvirGJ17587	B4M4S6	B4ME33	SURF6 domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.716
DvirGJ10181	DvirGJ17811	B4M4S6	B4LU00	SURF6 domain-containing protein.	Uncharacterized protein.	0.884
DvirGJ10181	DvirGJ18081	B4M4S6	B4MDU5	SURF6 domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.712
DvirGJ10181	DvirGJ18198	B4M4S6	B4M8W4	SURF6 domain-containing protein.	Uncharacterized protein.	0.944
DvirGJ10181	DvirGJ18264	B4M4S6	B4M977	SURF6 domain-containing protein.	Uncharacterized protein.	0.974
DvirGJ10181	DvirGJ18881	B4M4S6	B4M1B9	SURF6 domain-containing protein.	Uncharacterized protein, isoform A.	0.607
DvirGJ10181	DvirGJ19196	B4M4S6	B4M3D9	SURF6 domain-containing protein.	CP-type G domain-containing protein.	0.749
DvirGJ10181	DvirGJ19965	B4M4S6	B4LMG3	SURF6 domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.893