5 items (Drosophila virilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DvirGJ13137	Uncharacterized protein. (139 aa)
	DvirGJ13281	Uncharacterized protein. (119 aa)
	DvirGJ12683	Uncharacterized protein. (111 aa)
	DvirGJ21646	Uncharacterized protein. (174 aa)
	DvirGJ14252	Uncharacterized protein. (211 aa)

Your Current Organism:

Drosophila virilis

NCBI taxonomy Id: 7244
Other names: D. virilis

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DvirGJ12683	DvirGJ14252	B4LHE8	B4LUX7	Uncharacterized protein.	Uncharacterized protein.	0.516
DvirGJ12683	DvirGJ21646	B4LHE8	B4LKL1	Uncharacterized protein.	Uncharacterized protein.	0.577
DvirGJ13137	DvirGJ14252	B4LFD8	B4LUX7	Uncharacterized protein.	Uncharacterized protein.	0.559
DvirGJ13137	DvirGJ21646	B4LFD8	B4LKL1	Uncharacterized protein.	Uncharacterized protein.	0.566
DvirGJ13281	DvirGJ14252	B4LH16	B4LUX7	Uncharacterized protein.	Uncharacterized protein.	0.547
DvirGJ13281	DvirGJ21646	B4LH16	B4LKL1	Uncharacterized protein.	Uncharacterized protein.	0.652
DvirGJ14252	DvirGJ12683	B4LUX7	B4LHE8	Uncharacterized protein.	Uncharacterized protein.	0.516
DvirGJ14252	DvirGJ13137	B4LUX7	B4LFD8	Uncharacterized protein.	Uncharacterized protein.	0.559
DvirGJ14252	DvirGJ13281	B4LUX7	B4LH16	Uncharacterized protein.	Uncharacterized protein.	0.547
DvirGJ14252	DvirGJ21646	B4LUX7	B4LKL1	Uncharacterized protein.	Uncharacterized protein.	0.557
DvirGJ21646	DvirGJ12683	B4LKL1	B4LHE8	Uncharacterized protein.	Uncharacterized protein.	0.577
DvirGJ21646	DvirGJ13137	B4LKL1	B4LFD8	Uncharacterized protein.	Uncharacterized protein.	0.566
DvirGJ21646	DvirGJ13281	B4LKL1	B4LH16	Uncharacterized protein.	Uncharacterized protein.	0.652
DvirGJ21646	DvirGJ14252	B4LKL1	B4LUX7	Uncharacterized protein.	Uncharacterized protein.	0.557