(5 nodes) mRNA splice site selection, and PWI domain superfamily network (Drosophila virilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DvirGJ12244	Uncharacterized protein. (384 aa)
	DvirGJ16908	Uncharacterized protein. (822 aa)
	DvirGJ17734	Uncharacterized protein. (355 aa)
	DvirGJ23047	Uncharacterized protein, isoform A. (1092 aa)
	DvirGJ16712	Uncharacterized protein, isoform A. (1032 aa)

Your Current Organism:

Drosophila virilis

NCBI taxonomy Id: 7244
Other names: D. virilis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DvirGJ12244	DvirGJ16712	B4LFC5	B4M805	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.996
DvirGJ12244	DvirGJ16908	B4LFC5	B4LT16	Uncharacterized protein.	Uncharacterized protein.	0.926
DvirGJ12244	DvirGJ17734	B4LFC5	B4LT66	Uncharacterized protein.	Uncharacterized protein.	0.913
DvirGJ12244	DvirGJ23047	B4LFC5	B4M186	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.931
DvirGJ16712	DvirGJ12244	B4M805	B4LFC5	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.996
DvirGJ16712	DvirGJ16908	B4M805	B4LT16	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.971
DvirGJ16712	DvirGJ17734	B4M805	B4LT66	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.915
DvirGJ16712	DvirGJ23047	B4M805	B4M186	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.947
DvirGJ16908	DvirGJ12244	B4LT16	B4LFC5	Uncharacterized protein.	Uncharacterized protein.	0.926
DvirGJ16908	DvirGJ16712	B4LT16	B4M805	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.971
DvirGJ16908	DvirGJ17734	B4LT16	B4LT66	Uncharacterized protein.	Uncharacterized protein.	0.815
DvirGJ16908	DvirGJ23047	B4LT16	B4M186	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.864
DvirGJ17734	DvirGJ12244	B4LT66	B4LFC5	Uncharacterized protein.	Uncharacterized protein.	0.913
DvirGJ17734	DvirGJ16712	B4LT66	B4M805	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.915
DvirGJ17734	DvirGJ16908	B4LT66	B4LT16	Uncharacterized protein.	Uncharacterized protein.	0.815
DvirGJ17734	DvirGJ23047	B4LT66	B4M186	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.952
DvirGJ23047	DvirGJ12244	B4M186	B4LFC5	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.931
DvirGJ23047	DvirGJ16712	B4M186	B4M805	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.947
DvirGJ23047	DvirGJ16908	B4M186	B4LT16	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.864
DvirGJ23047	DvirGJ17734	B4M186	B4LT66	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.952