(23 nodes) Ligand-gated ion channel, and Response to amine network (Drosophila virilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DvirGJ26556	PBPe domain-containing protein. (669 aa)
	DvirGJ18639	Uncharacterized protein, isoform E. (784 aa)
	DvirGJ13401	PBPe domain-containing protein. (855 aa)
	DvirGJ11321	Uncharacterized protein. (655 aa)
	DvirGJ14047	PBPe domain-containing protein. (695 aa)
	DvirGJ13526	PBPe domain-containing protein. (733 aa)
	DvirGJ11565	PBPe domain-containing protein. (632 aa)
	DvirGJ13774	Uncharacterized protein, isoform A. (654 aa)
	DvirGJ13947	PBPe domain-containing protein. (623 aa)
	DvirGJ20743	Uncharacterized protein. (790 aa)
	DvirGJ22410	Uncharacterized protein. (498 aa)
	DvirGJ21918	PBPe domain-containing protein. (655 aa)
	DvirGJ15132	PBPe domain-containing protein. (767 aa)
	DvirGJ19616	Uncharacterized protein. (583 aa)
	DvirGJ23033	Uncharacterized protein. (673 aa)
	DvirGJ24269	PBPe domain-containing protein. (864 aa)
	DvirGJ23868	BHLH domain-containing protein. (410 aa)
	DvirGJ19368	PBPe domain-containing protein. (851 aa)
	DvirGJ10940	PBPe domain-containing protein. (658 aa)
	DvirGJ10424	PBPb domain-containing protein. (804 aa)
	DvirGJ17061	BZIP domain-containing protein. (448 aa)
	DvirGJ15906	Uncharacterized protein, isoform A. (640 aa)
	DvirGJ16133	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (944 aa)

Your Current Organism:

Drosophila virilis

NCBI taxonomy Id: 7244
Other names: D. virilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DvirGJ10424	DvirGJ11565	B4M6A7	B4LFY5	PBPb domain-containing protein.	PBPe domain-containing protein.	0.449
DvirGJ10424	DvirGJ13526	B4M6A7	B4LD45	PBPb domain-containing protein.	PBPe domain-containing protein.	0.428
DvirGJ10424	DvirGJ14047	B4M6A7	B4LCM8	PBPb domain-containing protein.	PBPe domain-containing protein.	0.428
DvirGJ10424	DvirGJ15132	B4M6A7	B4LQS7	PBPb domain-containing protein.	PBPe domain-containing protein.	0.426
DvirGJ10424	DvirGJ16133	B4M6A7	B4MDP5	PBPb domain-containing protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.443
DvirGJ10424	DvirGJ19368	B4M6A7	B4M1T5	PBPb domain-containing protein.	PBPe domain-containing protein.	0.428
DvirGJ10424	DvirGJ21918	B4M6A7	B4LPH8	PBPb domain-containing protein.	PBPe domain-containing protein.	0.430
DvirGJ10424	DvirGJ24269	B4M6A7	B4LWJ3	PBPb domain-containing protein.	PBPe domain-containing protein.	0.428
DvirGJ10940	DvirGJ11321	B4M4H3	B4LBN4	PBPe domain-containing protein.	Uncharacterized protein.	0.524
DvirGJ10940	DvirGJ11565	B4M4H3	B4LFY5	PBPe domain-containing protein.	PBPe domain-containing protein.	0.628
DvirGJ10940	DvirGJ16133	B4M4H3	B4MDP5	PBPe domain-containing protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.485
DvirGJ10940	DvirGJ19368	B4M4H3	B4M1T5	PBPe domain-containing protein.	PBPe domain-containing protein.	0.491
DvirGJ10940	DvirGJ21918	B4M4H3	B4LPH8	PBPe domain-containing protein.	PBPe domain-containing protein.	0.428
DvirGJ10940	DvirGJ23033	B4M4H3	B4LVS4	PBPe domain-containing protein.	Uncharacterized protein.	0.455
DvirGJ10940	DvirGJ24269	B4M4H3	B4LWJ3	PBPe domain-containing protein.	PBPe domain-containing protein.	0.496
DvirGJ11321	DvirGJ10940	B4LBN4	B4M4H3	Uncharacterized protein.	PBPe domain-containing protein.	0.524
DvirGJ11321	DvirGJ11565	B4LBN4	B4LFY5	Uncharacterized protein.	PBPe domain-containing protein.	0.428
DvirGJ11321	DvirGJ13526	B4LBN4	B4LD45	Uncharacterized protein.	PBPe domain-containing protein.	0.545
DvirGJ11321	DvirGJ16133	B4LBN4	B4MDP5	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.544
DvirGJ11321	DvirGJ19368	B4LBN4	B4M1T5	Uncharacterized protein.	PBPe domain-containing protein.	0.530