9 items (Drosophila virilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DvirGJ24376	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2259 aa)
	DvirGJ16984	Protein kinase domain-containing protein. (749 aa)
	DvirGJ14183	F-box domain-containing protein. (584 aa)
	DvirGJ16286	E2F_TDP domain-containing protein. (369 aa)
	DvirGJ20704	Uncharacterized protein. (188 aa)
	DvirGJ22371	Uncharacterized protein, isoform A. (957 aa)
	DvirGJ20546	Transcription factor. (447 aa)
	DvirGJ21948	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (197 aa)
	DvirGJ19490	Uncharacterized protein. (839 aa)

Your Current Organism:

Drosophila virilis

NCBI taxonomy Id: 7244
Other names: D. virilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DvirGJ14183	DvirGJ16286	B4MC20	B4MDN8	F-box domain-containing protein.	E2F_TDP domain-containing protein.	0.789
DvirGJ14183	DvirGJ19490	B4MC20	B4M2G6	F-box domain-containing protein.	Uncharacterized protein.	0.788
DvirGJ14183	DvirGJ20546	B4MC20	B4LMQ2	F-box domain-containing protein.	Transcription factor.	0.672
DvirGJ14183	DvirGJ21948	B4MC20	B4LPU2	F-box domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.570
DvirGJ16286	DvirGJ14183	B4MDN8	B4MC20	E2F_TDP domain-containing protein.	F-box domain-containing protein.	0.789
DvirGJ16286	DvirGJ19490	B4MDN8	B4M2G6	E2F_TDP domain-containing protein.	Uncharacterized protein.	0.985
DvirGJ16286	DvirGJ20546	B4MDN8	B4LMQ2	E2F_TDP domain-containing protein.	Transcription factor.	0.997
DvirGJ16984	DvirGJ24376	B4M7G4	B4LXF6	Protein kinase domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.711
DvirGJ19490	DvirGJ14183	B4M2G6	B4MC20	Uncharacterized protein.	F-box domain-containing protein.	0.788
DvirGJ19490	DvirGJ16286	B4M2G6	B4MDN8	Uncharacterized protein.	E2F_TDP domain-containing protein.	0.985
DvirGJ19490	DvirGJ20546	B4M2G6	B4LMQ2	Uncharacterized protein.	Transcription factor.	0.982
DvirGJ19490	DvirGJ21948	B4M2G6	B4LPU2	Uncharacterized protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.534
DvirGJ19490	DvirGJ24376	B4M2G6	B4LXF6	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.400
DvirGJ20546	DvirGJ14183	B4LMQ2	B4MC20	Transcription factor.	F-box domain-containing protein.	0.672
DvirGJ20546	DvirGJ16286	B4LMQ2	B4MDN8	Transcription factor.	E2F_TDP domain-containing protein.	0.997
DvirGJ20546	DvirGJ19490	B4LMQ2	B4M2G6	Transcription factor.	Uncharacterized protein.	0.982
DvirGJ21948	DvirGJ14183	B4LPU2	B4MC20	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	F-box domain-containing protein.	0.570
DvirGJ21948	DvirGJ19490	B4LPU2	B4M2G6	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Uncharacterized protein.	0.534
DvirGJ24376	DvirGJ16984	B4LXF6	B4M7G4	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Protein kinase domain-containing protein.	0.711
DvirGJ24376	DvirGJ19490	B4LXF6	B4M2G6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.400