20 items (Drosophila virilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DvirGJ16165	Uncharacterized protein, isoform A. (380 aa)
	DvirGJ17000	Integrin beta; Belongs to the integrin beta chain family. (911 aa)
	DvirGJ16540	Uncharacterized protein, isoform A. (512 aa)
	DvirGJ10465	Uncharacterized protein. (195 aa)
	DvirGJ18893	Uncharacterized protein, isoform A; Belongs to the PDGF/VEGF growth factor family. (327 aa)
	DvirGJ18848	Uncharacterized protein, isoform A; Belongs to the integrin alpha chain family. (1325 aa)
	spas	Spastin; ATP-dependent microtubule severing protein. Stimulates microtubule minus-end depolymerization and poleward microtubule flux in the mitotic spindle. Regulates microtubule stability in the neuromuscular junction synapse. Involved in lipid metabolism by regulating the size and distribution of lipid droplets. Involved in axon regeneration by regulating microtubule severing. Belongs to the AAA ATPase family. Spastin subfamily. (769 aa)
	DvirGJ23847	Uncharacterized protein. (185 aa)
	DvirGJ24290	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family. (1076 aa)
	DvirGJ20342	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (1535 aa)
	DvirGJ20064	Uncharacterized protein. (198 aa)
	DvirGJ13875	Uncharacterized protein. (1493 aa)
	DvirGJ13209	Uncharacterized protein. (192 aa)
	DvirGJ12360	Uncharacterized protein. (192 aa)
	DvirGJ12943	Uncharacterized protein. (184 aa)
	DvirGJ20603	Receptor protein-tyrosine kinase. (1635 aa)
	DvirGJ22286	Uncharacterized protein, isoform C. (210 aa)
	DvirGJ12795	Uncharacterized protein, isoform B. (1594 aa)
	DvirGJ15962	Uncharacterized protein, isoform B. (256 aa)
	DvirGJ16164	Uncharacterized protein, isoform B. (632 aa)

Your Current Organism:

Drosophila virilis

NCBI taxonomy Id: 7244
Other names: D. virilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DvirGJ10465	DvirGJ15962	B4M627	A0A0Q9WDC0	Uncharacterized protein.	Uncharacterized protein, isoform B.	0.441
DvirGJ10465	DvirGJ17000	B4M627	B4M7J6	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.466
DvirGJ10465	DvirGJ20064	B4M627	B4LLE0	Uncharacterized protein.	Uncharacterized protein.	0.616
DvirGJ10465	DvirGJ20342	B4M627	B4LQ80	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.496
DvirGJ10465	DvirGJ22286	B4M627	A0A0Q9WFZ7	Uncharacterized protein.	Uncharacterized protein, isoform C.	0.613
DvirGJ10465	DvirGJ24290	B4M627	B4LWM3	Uncharacterized protein.	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family.	0.531
DvirGJ12360	DvirGJ13209	B4LDX8	B4LG76	Uncharacterized protein.	Uncharacterized protein.	0.503
DvirGJ12360	DvirGJ17000	B4LDX8	B4M7J6	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.466
DvirGJ12360	DvirGJ20064	B4LDX8	B4LLE0	Uncharacterized protein.	Uncharacterized protein.	0.616
DvirGJ12360	DvirGJ22286	B4LDX8	A0A0Q9WFZ7	Uncharacterized protein.	Uncharacterized protein, isoform C.	0.613
DvirGJ12360	DvirGJ24290	B4LDX8	B4LWM3	Uncharacterized protein.	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family.	0.522
DvirGJ12795	DvirGJ12943	A0A0Q9WFV7	B4LDE8	Uncharacterized protein, isoform B.	Uncharacterized protein.	0.892
DvirGJ12943	DvirGJ12795	B4LDE8	A0A0Q9WFV7	Uncharacterized protein.	Uncharacterized protein, isoform B.	0.892
DvirGJ12943	DvirGJ13209	B4LDE8	B4LG76	Uncharacterized protein.	Uncharacterized protein.	0.400
DvirGJ12943	DvirGJ17000	B4LDE8	B4M7J6	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.592
DvirGJ12943	DvirGJ20064	B4LDE8	B4LLE0	Uncharacterized protein.	Uncharacterized protein.	0.424
DvirGJ12943	DvirGJ22286	B4LDE8	A0A0Q9WFZ7	Uncharacterized protein.	Uncharacterized protein, isoform C.	0.420
DvirGJ12943	DvirGJ24290	B4LDE8	B4LWM3	Uncharacterized protein.	Uncharacterized protein, isoform A; Belongs to the PI3/PI4-kinase family.	0.520
DvirGJ13209	DvirGJ12360	B4LG76	B4LDX8	Uncharacterized protein.	Uncharacterized protein.	0.503
DvirGJ13209	DvirGJ12943	B4LG76	B4LDE8	Uncharacterized protein.	Uncharacterized protein.	0.400