20 items (Drosophila virilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DvirGJ17806	Uncharacterized protein, isoform A. (947 aa)
	DvirGJ26971	Uncharacterized protein. (234 aa)
	DvirGJ14381	Uncharacterized protein, isoform F. (946 aa)
	DvirGJ18433	Uncharacterized protein, isoform F. (3497 aa)
	DvirGJ17530	Uncharacterized protein, isoform B. (897 aa)
	DvirGJ12409	Uncharacterized protein, isoform C. (1009 aa)
	DvirGJ12400	Uncharacterized protein. (239 aa)
	DvirGJ15538	Uncharacterized protein. (908 aa)
	DvirGJ15540	Uncharacterized protein. (914 aa)
	DvirGJ17290	MFS domain-containing protein. (631 aa)
	DvirGJ24171	Uncharacterized protein. (235 aa)
	DvirGJ24267	Uncharacterized protein. (858 aa)
	DvirGJ24288	Uncharacterized protein. (900 aa)
	DvirGJ24289	Uncharacterized protein. (901 aa)
	DvirGJ18363	Uncharacterized protein. (231 aa)
	DvirGJ17871	Uncharacterized protein, isoform C. (235 aa)
	DvirGJ17870	Uncharacterized protein. (234 aa)
	DvirGJ12217	Uncharacterized protein, isoform A. (1545 aa)
	DVIR88_6g0001	MHD1 domain-containing protein. (425 aa)
	DVIR88_6g0043	Uncharacterized protein. (3494 aa)

Your Current Organism:

Drosophila virilis

NCBI taxonomy Id: 7244
Other names: D. virilis

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DvirGJ15538	DvirGJ15540	B4LRH3	B4LRH4	Uncharacterized protein.	Uncharacterized protein.	0.472
DvirGJ15538	DvirGJ17806	B4LRH3	B4LTZ1	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.411
DvirGJ15538	DvirGJ24288	B4LRH3	B4LWM0	Uncharacterized protein.	Uncharacterized protein.	0.491
DvirGJ15538	DvirGJ24289	B4LRH3	B4LWM1	Uncharacterized protein.	Uncharacterized protein.	0.490
DvirGJ15540	DvirGJ15538	B4LRH4	B4LRH3	Uncharacterized protein.	Uncharacterized protein.	0.472
DvirGJ15540	DvirGJ17806	B4LRH4	B4LTZ1	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.563
DvirGJ15540	DvirGJ24288	B4LRH4	B4LWM0	Uncharacterized protein.	Uncharacterized protein.	0.785
DvirGJ15540	DvirGJ24289	B4LRH4	B4LWM1	Uncharacterized protein.	Uncharacterized protein.	0.778
DvirGJ17290	DvirGJ17806	B4LUD5	B4LTZ1	MFS domain-containing protein.	Uncharacterized protein, isoform A.	0.473
DvirGJ17806	DvirGJ15538	B4LTZ1	B4LRH3	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.411
DvirGJ17806	DvirGJ15540	B4LTZ1	B4LRH4	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.563
DvirGJ17806	DvirGJ17290	B4LTZ1	B4LUD5	Uncharacterized protein, isoform A.	MFS domain-containing protein.	0.473
DvirGJ17806	DvirGJ24288	B4LTZ1	B4LWM0	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.810
DvirGJ17806	DvirGJ24289	B4LTZ1	B4LWM1	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.828
DvirGJ24288	DvirGJ15538	B4LWM0	B4LRH3	Uncharacterized protein.	Uncharacterized protein.	0.491
DvirGJ24288	DvirGJ15540	B4LWM0	B4LRH4	Uncharacterized protein.	Uncharacterized protein.	0.785
DvirGJ24288	DvirGJ17806	B4LWM0	B4LTZ1	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.810
DvirGJ24288	DvirGJ24289	B4LWM0	B4LWM1	Uncharacterized protein.	Uncharacterized protein.	0.811
DvirGJ24289	DvirGJ15538	B4LWM1	B4LRH3	Uncharacterized protein.	Uncharacterized protein.	0.490
DvirGJ24289	DvirGJ15540	B4LWM1	B4LRH4	Uncharacterized protein.	Uncharacterized protein.	0.778