6 items (Drosophila virilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DvirGJ23948	Uncharacterized protein, isoform A. (826 aa)
	DvirGJ13411	Uncharacterized protein. (145 aa)
	DvirGJ12099	RING-type domain-containing protein. (456 aa)
	DvirGJ21151	RING-type domain-containing protein. (719 aa)
	DvirGJ19490	Uncharacterized protein. (839 aa)
	DvirGJ16434	Uncharacterized protein. (138 aa)

Your Current Organism:

Drosophila virilis

NCBI taxonomy Id: 7244
Other names: D. virilis

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DvirGJ13411	DvirGJ19490	B4LBE8	B4M2G6	Uncharacterized protein.	Uncharacterized protein.	0.899
DvirGJ13411	DvirGJ23948	B4LBE8	B4LZ51	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.672
DvirGJ16434	DvirGJ19490	B4M7K5	B4M2G6	Uncharacterized protein.	Uncharacterized protein.	0.899
DvirGJ16434	DvirGJ23948	B4M7K5	B4LZ51	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.672
DvirGJ19490	DvirGJ13411	B4M2G6	B4LBE8	Uncharacterized protein.	Uncharacterized protein.	0.899
DvirGJ19490	DvirGJ16434	B4M2G6	B4M7K5	Uncharacterized protein.	Uncharacterized protein.	0.899
DvirGJ19490	DvirGJ23948	B4M2G6	B4LZ51	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.974
DvirGJ23948	DvirGJ13411	B4LZ51	B4LBE8	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.672
DvirGJ23948	DvirGJ16434	B4LZ51	B4M7K5	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.672
DvirGJ23948	DvirGJ19490	B4LZ51	B4M2G6	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.974