(45 nodes) Circadian rhythm - plant, and Photoreceptor activity network (Eutrema salsugineum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4JQU5_EUTSA	Uncharacterized protein. (326 aa)
	V4K1B2_EUTSA	Dof-type domain-containing protein. (307 aa)
	V4K1M6_EUTSA	Uncharacterized protein. (561 aa)
	V4K6L1_EUTSA	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1118 aa)
	V4KBZ3_EUTSA	Uncharacterized protein. (294 aa)
	V4KFG5_EUTSA	Photolyase/cryptochrome alpha/beta domain-containing protein. (621 aa)
	V4KJN5_EUTSA	WD_REPEATS_REGION domain-containing protein. (89 aa)
	V4KLB0_EUTSA	Uncharacterized protein. (583 aa)
	V4KLI9_EUTSA	BZIP domain-containing protein. (231 aa)
	V4KNJ2_EUTSA	Uncharacterized protein. (619 aa)
	V4KQI8_EUTSA	Uncharacterized protein. (728 aa)
	V4KRR6_EUTSA	Uncharacterized protein. (286 aa)
	V4KWW5_EUTSA	Uncharacterized protein. (1171 aa)
	V4KX13_EUTSA	WD_REPEATS_REGION domain-containing protein. (374 aa)
	V4KXB4_EUTSA	Photolyase/cryptochrome alpha/beta domain-containing protein. (523 aa)
	V4KXD3_EUTSA	Uncharacterized protein. (609 aa)
	V4L368_EUTSA	HTH myb-type domain-containing protein. (647 aa)
	V4L401_EUTSA	Uncharacterized protein. (1033 aa)
	V4L4U3_EUTSA	HTH myb-type domain-containing protein. (335 aa)
	V4L974_EUTSA	HTH myb-type domain-containing protein. (340 aa)
	V4LCK3_EUTSA	BZIP domain-containing protein. (149 aa)
	V4LE91_EUTSA	Uncharacterized protein. (273 aa)
	V4LFL7_EUTSA	Uncharacterized protein. (537 aa)
	V4LHL1_EUTSA	Uncharacterized protein. (777 aa)
	V4LHQ7_EUTSA	Uncharacterized protein. (486 aa)
	V4LHS7_EUTSA	WD_REPEATS_REGION domain-containing protein. (400 aa)
	V4LLA0_EUTSA	HTH myb-type domain-containing protein. (334 aa)
	V4LRE4_EUTSA	Uncharacterized protein. (625 aa)
	V4LRN3_EUTSA	WD_REPEATS_REGION domain-containing protein. (565 aa)
	V4LTS7_EUTSA	Uncharacterized protein. (270 aa)
	V4M0A1_EUTSA	Histidine kinase domain-containing protein. (202 aa)
	V4M7A1_EUTSA	Uncharacterized protein. (809 aa)
	V4M9P5_EUTSA	HTH myb-type domain-containing protein. (303 aa)
	V4MB74_EUTSA	Uncharacterized protein. (80 aa)
	V4MBC7_EUTSA	PAS domain-containing protein. (623 aa)
	V4MD07_EUTSA	BHLH domain-containing protein. (478 aa)
	V4MJJ1_EUTSA	Uncharacterized protein. (440 aa)
	V4MK39_EUTSA	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1164 aa)
	V4MP29_EUTSA	Uncharacterized protein. (259 aa)
	V4N6A2_EUTSA	BZIP domain-containing protein. (169 aa)
	V4NF43_EUTSA	Photolyase/cryptochrome alpha/beta domain-containing protein. (612 aa)
	V4NU71_EUTSA	Uncharacterized protein. (672 aa)
	V4NUV1_EUTSA	Uncharacterized protein. (621 aa)
	V4NY64_EUTSA	Uncharacterized protein. (678 aa)
	V4P0C5_EUTSA	Elf4 domain-containing protein. (115 aa)

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4JQU5_EUTSA	V4KLI9_EUTSA	V4JQU5	V4KLI9	Uncharacterized protein.	BZIP domain-containing protein.	0.782
V4JQU5_EUTSA	V4LCK3_EUTSA	V4JQU5	V4LCK3	Uncharacterized protein.	BZIP domain-containing protein.	0.637
V4JQU5_EUTSA	V4N6A2_EUTSA	V4JQU5	V4N6A2	Uncharacterized protein.	BZIP domain-containing protein.	0.727
V4JQU5_EUTSA	V4NY64_EUTSA	V4JQU5	V4NY64	Uncharacterized protein.	Uncharacterized protein.	0.597
V4K1B2_EUTSA	V4K1M6_EUTSA	V4K1B2	V4K1M6	Dof-type domain-containing protein.	Uncharacterized protein.	0.550
V4K1B2_EUTSA	V4KLB0_EUTSA	V4K1B2	V4KLB0	Dof-type domain-containing protein.	Uncharacterized protein.	0.554
V4K1B2_EUTSA	V4KQI8_EUTSA	V4K1B2	V4KQI8	Dof-type domain-containing protein.	Uncharacterized protein.	0.547
V4K1B2_EUTSA	V4KWW5_EUTSA	V4K1B2	V4KWW5	Dof-type domain-containing protein.	Uncharacterized protein.	0.960
V4K1B2_EUTSA	V4KXD3_EUTSA	V4K1B2	V4KXD3	Dof-type domain-containing protein.	Uncharacterized protein.	0.554
V4K1B2_EUTSA	V4L368_EUTSA	V4K1B2	V4L368	Dof-type domain-containing protein.	HTH myb-type domain-containing protein.	0.564
V4K1B2_EUTSA	V4MBC7_EUTSA	V4K1B2	V4MBC7	Dof-type domain-containing protein.	PAS domain-containing protein.	0.960
V4K1B2_EUTSA	V4NU71_EUTSA	V4K1B2	V4NU71	Dof-type domain-containing protein.	Uncharacterized protein.	0.545
V4K1B2_EUTSA	V4NUV1_EUTSA	V4K1B2	V4NUV1	Dof-type domain-containing protein.	Uncharacterized protein.	0.565
V4K1B2_EUTSA	V4P0C5_EUTSA	V4K1B2	V4P0C5	Dof-type domain-containing protein.	Elf4 domain-containing protein.	0.439
V4K1M6_EUTSA	V4K1B2_EUTSA	V4K1M6	V4K1B2	Uncharacterized protein.	Dof-type domain-containing protein.	0.550
V4K1M6_EUTSA	V4K6L1_EUTSA	V4K1M6	V4K6L1	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.556
V4K1M6_EUTSA	V4KFG5_EUTSA	V4K1M6	V4KFG5	Uncharacterized protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.521
V4K1M6_EUTSA	V4KLB0_EUTSA	V4K1M6	V4KLB0	Uncharacterized protein.	Uncharacterized protein.	0.499
V4K1M6_EUTSA	V4KLI9_EUTSA	V4K1M6	V4KLI9	Uncharacterized protein.	BZIP domain-containing protein.	0.559
V4K1M6_EUTSA	V4KNJ2_EUTSA	V4K1M6	V4KNJ2	Uncharacterized protein.	Uncharacterized protein.	0.555

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