(17 nodes) Circadian rhythm - plant, and Enzyme-substrate adaptor activity network (Eutrema salsugineum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4JQU5_EUTSA	Uncharacterized protein. (326 aa)
	V4KBZ3_EUTSA	Uncharacterized protein. (294 aa)
	V4KFG5_EUTSA	Photolyase/cryptochrome alpha/beta domain-containing protein. (621 aa)
	V4KJN5_EUTSA	WD_REPEATS_REGION domain-containing protein. (89 aa)
	V4KLI9_EUTSA	BZIP domain-containing protein. (231 aa)
	V4KX13_EUTSA	WD_REPEATS_REGION domain-containing protein. (374 aa)
	V4L401_EUTSA	Uncharacterized protein. (1033 aa)
	V4LCK3_EUTSA	BZIP domain-containing protein. (149 aa)
	V4LFL7_EUTSA	Uncharacterized protein. (537 aa)
	V4LHL1_EUTSA	Uncharacterized protein. (777 aa)
	V4LHS7_EUTSA	WD_REPEATS_REGION domain-containing protein. (400 aa)
	V4LRN3_EUTSA	WD_REPEATS_REGION domain-containing protein. (565 aa)
	V4MJJ1_EUTSA	Uncharacterized protein. (440 aa)
	V4MP29_EUTSA	Uncharacterized protein. (259 aa)
	V4N6A2_EUTSA	BZIP domain-containing protein. (169 aa)
	V4NF43_EUTSA	Photolyase/cryptochrome alpha/beta domain-containing protein. (612 aa)
	V4NY64_EUTSA	Uncharacterized protein. (678 aa)

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4JQU5_EUTSA	V4KLI9_EUTSA	V4JQU5	V4KLI9	Uncharacterized protein.	BZIP domain-containing protein.	0.782
V4JQU5_EUTSA	V4LCK3_EUTSA	V4JQU5	V4LCK3	Uncharacterized protein.	BZIP domain-containing protein.	0.637
V4JQU5_EUTSA	V4N6A2_EUTSA	V4JQU5	V4N6A2	Uncharacterized protein.	BZIP domain-containing protein.	0.727
V4JQU5_EUTSA	V4NY64_EUTSA	V4JQU5	V4NY64	Uncharacterized protein.	Uncharacterized protein.	0.597
V4KBZ3_EUTSA	V4KLI9_EUTSA	V4KBZ3	V4KLI9	Uncharacterized protein.	BZIP domain-containing protein.	0.446
V4KBZ3_EUTSA	V4LCK3_EUTSA	V4KBZ3	V4LCK3	Uncharacterized protein.	BZIP domain-containing protein.	0.568
V4KBZ3_EUTSA	V4MP29_EUTSA	V4KBZ3	V4MP29	Uncharacterized protein.	Uncharacterized protein.	0.545
V4KBZ3_EUTSA	V4NY64_EUTSA	V4KBZ3	V4NY64	Uncharacterized protein.	Uncharacterized protein.	0.565
V4KFG5_EUTSA	V4KJN5_EUTSA	V4KFG5	V4KJN5	Photolyase/cryptochrome alpha/beta domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.406
V4KFG5_EUTSA	V4KLI9_EUTSA	V4KFG5	V4KLI9	Photolyase/cryptochrome alpha/beta domain-containing protein.	BZIP domain-containing protein.	0.550
V4KFG5_EUTSA	V4KX13_EUTSA	V4KFG5	V4KX13	Photolyase/cryptochrome alpha/beta domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.918
V4KFG5_EUTSA	V4L401_EUTSA	V4KFG5	V4L401	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.943
V4KFG5_EUTSA	V4LCK3_EUTSA	V4KFG5	V4LCK3	Photolyase/cryptochrome alpha/beta domain-containing protein.	BZIP domain-containing protein.	0.404
V4KFG5_EUTSA	V4LFL7_EUTSA	V4KFG5	V4LFL7	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.467
V4KFG5_EUTSA	V4LHL1_EUTSA	V4KFG5	V4LHL1	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.974
V4KFG5_EUTSA	V4LHS7_EUTSA	V4KFG5	V4LHS7	Photolyase/cryptochrome alpha/beta domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.907
V4KFG5_EUTSA	V4N6A2_EUTSA	V4KFG5	V4N6A2	Photolyase/cryptochrome alpha/beta domain-containing protein.	BZIP domain-containing protein.	0.416
V4KFG5_EUTSA	V4NF43_EUTSA	V4KFG5	V4NF43	Photolyase/cryptochrome alpha/beta domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.901
V4KFG5_EUTSA	V4NY64_EUTSA	V4KFG5	V4NY64	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.981
V4KJN5_EUTSA	V4KFG5_EUTSA	V4KJN5	V4KFG5	WD_REPEATS_REGION domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.406

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