(48 nodes) Late endosome to vacuole transport network (Eutrema salsugineum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4LDB5_EUTSA	Uncharacterized protein. (402 aa)
	V4P547_EUTSA	Uncharacterized protein. (462 aa)
	V4NZX0_EUTSA	Uncharacterized protein. (679 aa)
	V4NN66_EUTSA	VPS9 domain-containing protein. (528 aa)
	V4NCA2_EUTSA	Uncharacterized protein. (173 aa)
	V4NAU2_EUTSA	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (250 aa)
	V4LGZ5_EUTSA	Uncharacterized protein. (401 aa)
	V4LIJ0_EUTSA	Uncharacterized protein. (215 aa)
	V4LIJ7_EUTSA	Uncharacterized protein. (229 aa)
	V4LJ55_EUTSA	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (267 aa)
	V4LLZ4_EUTSA	Uncharacterized protein. (217 aa)
	V4LUI1_EUTSA	Uncharacterized protein. (1492 aa)
	V4LVC0_EUTSA	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (250 aa)
	V4LVE1_EUTSA	Uncharacterized protein. (423 aa)
	V4LZA2_EUTSA	Uncharacterized protein. (609 aa)
	V4M233_EUTSA	Uncharacterized protein. (122 aa)
	V4M6S9_EUTSA	Uncharacterized protein. (206 aa)
	V4M8C4_EUTSA	Uncharacterized protein. (621 aa)
	V4M8D5_EUTSA	Uncharacterized protein. (465 aa)
	V4M943_EUTSA	Uncharacterized protein. (154 aa)
	V4M9E3_EUTSA	Uncharacterized protein. (235 aa)
	V4MCY9_EUTSA	Uncharacterized protein. (218 aa)
	V4MC76_EUTSA	J domain-containing protein. (2556 aa)
	V4MF38_EUTSA	Uncharacterized protein. (672 aa)
	V4MFE7_EUTSA	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (209 aa)
	V4MIW0_EUTSA	Uncharacterized protein. (223 aa)
	V4MJC5_EUTSA	Uncharacterized protein. (179 aa)
	V4MNW2_EUTSA	Uncharacterized protein. (135 aa)
	V4MQK7_EUTSA	Uncharacterized protein. (200 aa)
	V4MWV8_EUTSA	Uncharacterized protein. (225 aa)
	V4N3Z2_EUTSA	Uncharacterized protein. (564 aa)
	V4N4R5_EUTSA	GLUE N-terminal domain-containing protein. (439 aa)
	V4N6R1_EUTSA	Uncharacterized protein. (1624 aa)
	V4KU61_EUTSA	Uncharacterized protein. (140 aa)
	V4KSA7_EUTSA	Uncharacterized protein. (688 aa)
	V4KR25_EUTSA	Uncharacterized protein. (235 aa)
	V4KDL7_EUTSA	Uncharacterized protein. (203 aa)
	V4L949_EUTSA	Uncharacterized protein. (381 aa)
	V4L6B0_EUTSA	BRO1 domain-containing protein. (847 aa)
	V4K0Z5_EUTSA	Uncharacterized protein. (448 aa)
	V4L385_EUTSA	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (210 aa)
	V4L5L4_EUTSA	Uncharacterized protein. (203 aa)
	V4L2Q1_EUTSA	Uncharacterized protein. (210 aa)
	V4L1G5_EUTSA	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (268 aa)
	V4L0V2_EUTSA	Uncharacterized protein. (515 aa)
	V4KX80_EUTSA	Uncharacterized protein. (508 aa)
	V4KVX3_EUTSA	Uncharacterized protein. (216 aa)
	V4LAZ3_EUTSA	Uncharacterized protein. (222 aa)

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

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structured XML interaction data, according to the 'PSI-MI' data standard

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... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4KDL7_EUTSA	V4KR25_EUTSA	V4KDL7	V4KR25	Uncharacterized protein.	Uncharacterized protein.	0.932
V4KDL7_EUTSA	V4KVX3_EUTSA	V4KDL7	V4KVX3	Uncharacterized protein.	Uncharacterized protein.	0.644
V4KDL7_EUTSA	V4L2Q1_EUTSA	V4KDL7	V4L2Q1	Uncharacterized protein.	Uncharacterized protein.	0.977
V4KDL7_EUTSA	V4L385_EUTSA	V4KDL7	V4L385	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.533
V4KDL7_EUTSA	V4L5L4_EUTSA	V4KDL7	V4L5L4	Uncharacterized protein.	Uncharacterized protein.	0.914
V4KDL7_EUTSA	V4L6B0_EUTSA	V4KDL7	V4L6B0	Uncharacterized protein.	BRO1 domain-containing protein.	0.451
V4KDL7_EUTSA	V4LAZ3_EUTSA	V4KDL7	V4LAZ3	Uncharacterized protein.	Uncharacterized protein.	0.982
V4KDL7_EUTSA	V4LIJ0_EUTSA	V4KDL7	V4LIJ0	Uncharacterized protein.	Uncharacterized protein.	0.931
V4KDL7_EUTSA	V4LIJ7_EUTSA	V4KDL7	V4LIJ7	Uncharacterized protein.	Uncharacterized protein.	0.964
V4KDL7_EUTSA	V4LLZ4_EUTSA	V4KDL7	V4LLZ4	Uncharacterized protein.	Uncharacterized protein.	0.644
V4KDL7_EUTSA	V4LVC0_EUTSA	V4KDL7	V4LVC0	Uncharacterized protein.	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.486
V4KDL7_EUTSA	V4LVE1_EUTSA	V4KDL7	V4LVE1	Uncharacterized protein.	Uncharacterized protein.	0.636
V4KDL7_EUTSA	V4M9E3_EUTSA	V4KDL7	V4M9E3	Uncharacterized protein.	Uncharacterized protein.	0.917
V4KDL7_EUTSA	V4MCY9_EUTSA	V4KDL7	V4MCY9	Uncharacterized protein.	Uncharacterized protein.	0.920
V4KDL7_EUTSA	V4MFE7_EUTSA	V4KDL7	V4MFE7	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.533
V4KDL7_EUTSA	V4MIW0_EUTSA	V4KDL7	V4MIW0	Uncharacterized protein.	Uncharacterized protein.	0.982
V4KDL7_EUTSA	V4MWV8_EUTSA	V4KDL7	V4MWV8	Uncharacterized protein.	Uncharacterized protein.	0.977
V4KDL7_EUTSA	V4N4R5_EUTSA	V4KDL7	V4N4R5	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.622
V4KDL7_EUTSA	V4NAU2_EUTSA	V4KDL7	V4NAU2	Uncharacterized protein.	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.486
V4KDL7_EUTSA	V4P547_EUTSA	V4KDL7	V4P547	Uncharacterized protein.	Uncharacterized protein.	0.996

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