(117 nodes) Nuclear body network (Eutrema salsugineum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4K8F5_EUTSA	Uncharacterized protein. (797 aa)
	V4K922_EUTSA	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (131 aa)
	V4K9M3_EUTSA	Rhomboid domain-containing protein. (299 aa)
	V4KAG6_EUTSA	RRM domain-containing protein. (245 aa)
	V4KDD4_EUTSA	Uncharacterized protein. (543 aa)
	V4KDR0_EUTSA	RING-type domain-containing protein. (310 aa)
	V4KDT6_EUTSA	Uncharacterized protein. (364 aa)
	V4KDV1_EUTSA	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1122 aa)
	V4KE07_EUTSA	Uncharacterized protein. (775 aa)
	V4KE99_EUTSA	Uncharacterized protein. (601 aa)
	V4KFG5_EUTSA	Photolyase/cryptochrome alpha/beta domain-containing protein. (621 aa)
	V4KFI0_EUTSA	RRM domain-containing protein. (271 aa)
	V4KHL4_EUTSA	Uncharacterized protein. (418 aa)
	V4KJL3_EUTSA	Uncharacterized protein. (126 aa)
	V4KJP5_EUTSA	Uncharacterized protein. (867 aa)
	V4KJP7_EUTSA	Uncharacterized protein. (569 aa)
	V4KKK6_EUTSA	Uncharacterized protein. (917 aa)
	V4KL43_EUTSA	Uncharacterized protein. (568 aa)
	V4KMJ6_EUTSA	RRM domain-containing protein. (551 aa)
	V4KN26_EUTSA	RRM domain-containing protein. (220 aa)
	V4KN62_EUTSA	Protein kinase domain-containing protein. (514 aa)
	V4KNI1_EUTSA	RRM domain-containing protein. (292 aa)
	V4KNL4_EUTSA	Uncharacterized protein. (569 aa)
	V4KPZ9_EUTSA	Nop domain-containing protein. (484 aa)
	V4KQH3_EUTSA	Uncharacterized protein. (263 aa)
	V4KTG4_EUTSA	Uncharacterized protein. (527 aa)
	V4KWI4_EUTSA	Uncharacterized protein. (187 aa)
	V4KWR3_EUTSA	BHLH domain-containing protein. (363 aa)
	V4KX77_EUTSA	Uncharacterized protein. (324 aa)
	V4KXG9_EUTSA	Uncharacterized protein. (169 aa)
	V4KY12_EUTSA	Uncharacterized protein. (578 aa)
	V4JVX6_EUTSA	Uncharacterized protein. (326 aa)
	V4JYF1_EUTSA	Matrin-type domain-containing protein. (244 aa)
	V4JYR7_EUTSA	Uncharacterized protein. (567 aa)
	V4JZ37_EUTSA	Uncharacterized protein. (443 aa)
	V4K004_EUTSA	RRM domain-containing protein. (434 aa)
	V4K5L8_EUTSA	Uncharacterized protein. (606 aa)
	V4K6B6_EUTSA	Uncharacterized protein. (92 aa)
	V4LIC5_EUTSA	Small nuclear ribonucleoprotein-associated protein. (262 aa)
	V4LJC1_EUTSA	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (192 aa)
	V4LJT8_EUTSA	Importin N-terminal domain-containing protein. (890 aa)
	V4LJY4_EUTSA	Uncharacterized protein. (182 aa)
	V4LM30_EUTSA	Uncharacterized protein. (228 aa)
	V4LMB8_EUTSA	RRM domain-containing protein. (272 aa)
	V4LMN2_EUTSA	PPIase cyclophilin-type domain-containing protein. (384 aa)
	V4LNY9_EUTSA	RING-type domain-containing protein. (476 aa)
	V4LP66_EUTSA	Uncharacterized protein. (280 aa)
	V4LPV6_EUTSA	Uncharacterized protein. (170 aa)
	V4LPY3_EUTSA	Uncharacterized protein. (314 aa)
	V4LQU6_EUTSA	Uncharacterized protein. (395 aa)
	V4LRH8_EUTSA	Uncharacterized protein. (337 aa)
	V4LRN0_EUTSA	Uncharacterized protein. (160 aa)
	V4LTK0_EUTSA	Uncharacterized protein. (647 aa)
	V4LTV5_EUTSA	Uncharacterized protein. (286 aa)
	V4LVV5_EUTSA	Morc6_S5 domain-containing protein. (707 aa)
	V4LXS5_EUTSA	RRM domain-containing protein. (260 aa)
	V4LY94_EUTSA	RRM domain-containing protein. (227 aa)
	V4LYT4_EUTSA	Uncharacterized protein. (204 aa)
	V4LZG1_EUTSA	Uncharacterized protein. (411 aa)
	V4M000_EUTSA	Nop domain-containing protein. (333 aa)
	V4M0P9_EUTSA	Uncharacterized protein. (164 aa)
	V4M7V9_EUTSA	AP2/ERF domain-containing protein. (227 aa)
	V4M8E0_EUTSA	RRM domain-containing protein. (241 aa)
	V4MB91_EUTSA	Uncharacterized protein. (191 aa)
	V4MBY8_EUTSA	PPIase cyclophilin-type domain-containing protein. (810 aa)
	V4MC27_EUTSA	Uncharacterized protein. (360 aa)
	V4MCD1_EUTSA	Uncharacterized protein. (922 aa)
	V4MDV1_EUTSA	Uncharacterized protein. (290 aa)
	V4MEG9_EUTSA	Uncharacterized protein. (317 aa)
	V4MES6_EUTSA	Protein kinase domain-containing protein. (499 aa)
	V4MF76_EUTSA	Uncharacterized protein. (138 aa)
	V4MFL5_EUTSA	Uncharacterized protein. (192 aa)
	V4MH69_EUTSA	Uncharacterized protein. (385 aa)
	V4MHI8_EUTSA	Uncharacterized protein. (368 aa)
	V4MHJ5_EUTSA	Uncharacterized protein. (125 aa)
	V4MJC1_EUTSA	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1874 aa)
	V4MK40_EUTSA	TPR_REGION domain-containing protein. (485 aa)
	V4MQD8_EUTSA	Small nuclear ribonucleoprotein-associated protein. (263 aa)
	V4MTU6_EUTSA	Nop domain-containing protein. (448 aa)
	V4MUQ5_EUTSA	Uncharacterized protein. (769 aa)
	V4MVK6_EUTSA	RRM domain-containing protein. (89 aa)
	V4MZH9_EUTSA	Uncharacterized protein. (1021 aa)
	V4N0Q0_EUTSA	Uncharacterized protein. (536 aa)
	V4N2A7_EUTSA	Uncharacterized protein. (337 aa)
	V4N639_EUTSA	RRM domain-containing protein. (217 aa)
	V4N865_EUTSA	SBP-type domain-containing protein. (803 aa)
	V4NBZ1_EUTSA	RRM domain-containing protein. (226 aa)
	V4NC62_EUTSA	Morc6_S5 domain-containing protein. (818 aa)
	V4NF43_EUTSA	Photolyase/cryptochrome alpha/beta domain-containing protein. (612 aa)
	V4NG83_EUTSA	Uncharacterized protein. (288 aa)
	V4NGZ0_EUTSA	RRM domain-containing protein. (446 aa)
	V4NN03_EUTSA	RNA_GG_bind domain-containing protein. (245 aa)
	V4NPQ7_EUTSA	Uncharacterized protein. (328 aa)
	V4NTR8_EUTSA	C2H2-type domain-containing protein. (715 aa)
	V4NTS5_EUTSA	C2H2-type domain-containing protein. (716 aa)
	V4NUV1_EUTSA	Uncharacterized protein. (621 aa)
	V4NY64_EUTSA	Uncharacterized protein. (678 aa)
	V4P0A6_EUTSA	Uncharacterized protein. (382 aa)
	V4KZC5_EUTSA	Uncharacterized protein. (274 aa)
	V4KZM0_EUTSA	Uncharacterized protein. (581 aa)
	V4L0P3_EUTSA	Fibronectin type-III domain-containing protein. (616 aa)
	V4L0W5_EUTSA	Uncharacterized protein. (289 aa)
	V4L363_EUTSA	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1917 aa)
	V4L3Y4_EUTSA	Cytochrome b561 and DOMON domain-containing protein. (407 aa)
	V4L705_EUTSA	Coilin_N domain-containing protein. (611 aa)
	V4L733_EUTSA	Uncharacterized protein. (620 aa)
	V4L7Z2_EUTSA	LRRcap domain-containing protein. (264 aa)
	V4L8H2_EUTSA	Uncharacterized protein. (136 aa)
	V4LAJ4_EUTSA	Uncharacterized protein. (907 aa)
	V4LBK7_EUTSA	Uncharacterized protein. (486 aa)
	V4LC32_EUTSA	Morc6_S5 domain-containing protein. (709 aa)
	V4LCK1_EUTSA	C2H2-type domain-containing protein. (334 aa)
	V4LDV1_EUTSA	RRM domain-containing protein. (258 aa)
	V4LF64_EUTSA	Uncharacterized protein. (995 aa)
	V4LG23_EUTSA	Fibronectin type-III domain-containing protein. (612 aa)
	V4LHL1_EUTSA	Uncharacterized protein. (777 aa)
	V4LHZ6_EUTSA	DUF1767 domain-containing protein. (446 aa)

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4JYF1_EUTSA	V4K004_EUTSA	V4JYF1	V4K004	Matrin-type domain-containing protein.	RRM domain-containing protein.	0.488
V4JYF1_EUTSA	V4K922_EUTSA	V4JYF1	V4K922	Matrin-type domain-containing protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.735
V4JYF1_EUTSA	V4KDD4_EUTSA	V4JYF1	V4KDD4	Matrin-type domain-containing protein.	Uncharacterized protein.	0.960
V4JYF1_EUTSA	V4KNL4_EUTSA	V4JYF1	V4KNL4	Matrin-type domain-containing protein.	Uncharacterized protein.	0.948
V4JYF1_EUTSA	V4KPZ9_EUTSA	V4JYF1	V4KPZ9	Matrin-type domain-containing protein.	Nop domain-containing protein.	0.874
V4JYF1_EUTSA	V4L7Z2_EUTSA	V4JYF1	V4L7Z2	Matrin-type domain-containing protein.	LRRcap domain-containing protein.	0.736
V4JYF1_EUTSA	V4LIC5_EUTSA	V4JYF1	V4LIC5	Matrin-type domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.778
V4JYF1_EUTSA	V4LM30_EUTSA	V4JYF1	V4LM30	Matrin-type domain-containing protein.	Uncharacterized protein.	0.712
V4JYF1_EUTSA	V4M000_EUTSA	V4JYF1	V4M000	Matrin-type domain-containing protein.	Nop domain-containing protein.	0.874
V4JYF1_EUTSA	V4MJC1_EUTSA	V4JYF1	V4MJC1	Matrin-type domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.471
V4JYF1_EUTSA	V4MQD8_EUTSA	V4JYF1	V4MQD8	Matrin-type domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.778
V4JYF1_EUTSA	V4MTU6_EUTSA	V4JYF1	V4MTU6	Matrin-type domain-containing protein.	Nop domain-containing protein.	0.874
V4JYF1_EUTSA	V4MVK6_EUTSA	V4JYF1	V4MVK6	Matrin-type domain-containing protein.	RRM domain-containing protein.	0.712
V4JYF1_EUTSA	V4MZH9_EUTSA	V4JYF1	V4MZH9	Matrin-type domain-containing protein.	Uncharacterized protein.	0.968
V4JYF1_EUTSA	V4NGZ0_EUTSA	V4JYF1	V4NGZ0	Matrin-type domain-containing protein.	RRM domain-containing protein.	0.488
V4K004_EUTSA	V4JYF1_EUTSA	V4K004	V4JYF1	RRM domain-containing protein.	Matrin-type domain-containing protein.	0.488
V4K004_EUTSA	V4K922_EUTSA	V4K004	V4K922	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.928
V4K004_EUTSA	V4KN26_EUTSA	V4K004	V4KN26	RRM domain-containing protein.	RRM domain-containing protein.	0.729
V4K004_EUTSA	V4KNI1_EUTSA	V4K004	V4KNI1	RRM domain-containing protein.	RRM domain-containing protein.	0.903
V4K004_EUTSA	V4KQH3_EUTSA	V4K004	V4KQH3	RRM domain-containing protein.	Uncharacterized protein.	0.834

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