(18 nodes) Arf GTPase activating protein network (Eutrema salsugineum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4MUQ5_EUTSA	Uncharacterized protein. (769 aa)
	V4MZK5_EUTSA	Uncharacterized protein. (336 aa)
	V4MV61_EUTSA	Arf-GAP domain-containing protein. (648 aa)
	V4MIR9_EUTSA	Uncharacterized protein. (337 aa)
	V4MHV8_EUTSA	Arf-GAP domain-containing protein. (401 aa)
	V4M2X3_EUTSA	Uncharacterized protein. (404 aa)
	V4M090_EUTSA	Arf-GAP domain-containing protein. (602 aa)
	V4LY82_EUTSA	Arf-GAP domain-containing protein. (416 aa)
	V4LTF6_EUTSA	Arf-GAP domain-containing protein. (640 aa)
	V4LT51_EUTSA	Arf-GAP domain-containing protein. (478 aa)
	V4LP90_EUTSA	Arf-GAP domain-containing protein. (453 aa)
	V4LJ44_EUTSA	Arf-GAP domain-containing protein. (405 aa)
	V4LE13_EUTSA	Arf-GAP domain-containing protein. (271 aa)
	V4LCJ9_EUTSA	Arf-GAP domain-containing protein. (253 aa)
	V4LC49_EUTSA	Uncharacterized protein. (828 aa)
	V4L471_EUTSA	Arf-GAP domain-containing protein. (476 aa)
	V4KP55_EUTSA	Uncharacterized protein. (831 aa)
	V4KE07_EUTSA	Uncharacterized protein. (775 aa)

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4L471_EUTSA	V4LE13_EUTSA	V4L471	V4LE13	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4L471_EUTSA	V4LJ44_EUTSA	V4L471	V4LJ44	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4L471_EUTSA	V4LY82_EUTSA	V4L471	V4LY82	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4L471_EUTSA	V4MHV8_EUTSA	V4L471	V4MHV8	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4LE13_EUTSA	V4L471_EUTSA	V4LE13	V4L471	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4LE13_EUTSA	V4LP90_EUTSA	V4LE13	V4LP90	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4LJ44_EUTSA	V4L471_EUTSA	V4LJ44	V4L471	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4LJ44_EUTSA	V4LP90_EUTSA	V4LJ44	V4LP90	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4LP90_EUTSA	V4LE13_EUTSA	V4LP90	V4LE13	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4LP90_EUTSA	V4LJ44_EUTSA	V4LP90	V4LJ44	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4LP90_EUTSA	V4LY82_EUTSA	V4LP90	V4LY82	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4LP90_EUTSA	V4MHV8_EUTSA	V4LP90	V4MHV8	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4LY82_EUTSA	V4L471_EUTSA	V4LY82	V4L471	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4LY82_EUTSA	V4LP90_EUTSA	V4LY82	V4LP90	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4MHV8_EUTSA	V4L471_EUTSA	V4MHV8	V4L471	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851
V4MHV8_EUTSA	V4LP90_EUTSA	V4MHV8	V4LP90	Arf-GAP domain-containing protein.	Arf-GAP domain-containing protein.	0.851

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About