(14 nodes) Snf7 family network (Eutrema salsugineum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4M9E3_EUTSA	Uncharacterized protein. (235 aa)
	V4MIW0_EUTSA	Uncharacterized protein. (223 aa)
	V4KR25_EUTSA	Uncharacterized protein. (235 aa)
	V4KVX3_EUTSA	Uncharacterized protein. (216 aa)
	V4L2Q1_EUTSA	Uncharacterized protein. (210 aa)
	V4L5L4_EUTSA	Uncharacterized protein. (203 aa)
	V4LAZ3_EUTSA	Uncharacterized protein. (222 aa)
	V4LIJ0_EUTSA	Uncharacterized protein. (215 aa)
	V4LIJ7_EUTSA	Uncharacterized protein. (229 aa)
	V4LLZ4_EUTSA	Uncharacterized protein. (217 aa)
	V4MWV8_EUTSA	Uncharacterized protein. (225 aa)
	V4LVE1_EUTSA	Uncharacterized protein. (423 aa)
	V4MCY9_EUTSA	Uncharacterized protein. (218 aa)
	V4KDL7_EUTSA	Uncharacterized protein. (203 aa)

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4KDL7_EUTSA	V4KR25_EUTSA	V4KDL7	V4KR25	Uncharacterized protein.	Uncharacterized protein.	0.932
V4KDL7_EUTSA	V4KVX3_EUTSA	V4KDL7	V4KVX3	Uncharacterized protein.	Uncharacterized protein.	0.644
V4KDL7_EUTSA	V4L2Q1_EUTSA	V4KDL7	V4L2Q1	Uncharacterized protein.	Uncharacterized protein.	0.977
V4KDL7_EUTSA	V4L5L4_EUTSA	V4KDL7	V4L5L4	Uncharacterized protein.	Uncharacterized protein.	0.914
V4KDL7_EUTSA	V4LAZ3_EUTSA	V4KDL7	V4LAZ3	Uncharacterized protein.	Uncharacterized protein.	0.982
V4KDL7_EUTSA	V4LIJ0_EUTSA	V4KDL7	V4LIJ0	Uncharacterized protein.	Uncharacterized protein.	0.931
V4KDL7_EUTSA	V4LIJ7_EUTSA	V4KDL7	V4LIJ7	Uncharacterized protein.	Uncharacterized protein.	0.964
V4KDL7_EUTSA	V4LLZ4_EUTSA	V4KDL7	V4LLZ4	Uncharacterized protein.	Uncharacterized protein.	0.644
V4KDL7_EUTSA	V4LVE1_EUTSA	V4KDL7	V4LVE1	Uncharacterized protein.	Uncharacterized protein.	0.636
V4KDL7_EUTSA	V4M9E3_EUTSA	V4KDL7	V4M9E3	Uncharacterized protein.	Uncharacterized protein.	0.917
V4KDL7_EUTSA	V4MCY9_EUTSA	V4KDL7	V4MCY9	Uncharacterized protein.	Uncharacterized protein.	0.920
V4KDL7_EUTSA	V4MIW0_EUTSA	V4KDL7	V4MIW0	Uncharacterized protein.	Uncharacterized protein.	0.982
V4KDL7_EUTSA	V4MWV8_EUTSA	V4KDL7	V4MWV8	Uncharacterized protein.	Uncharacterized protein.	0.977
V4KR25_EUTSA	V4KDL7_EUTSA	V4KR25	V4KDL7	Uncharacterized protein.	Uncharacterized protein.	0.932
V4KR25_EUTSA	V4KVX3_EUTSA	V4KR25	V4KVX3	Uncharacterized protein.	Uncharacterized protein.	0.820
V4KR25_EUTSA	V4L2Q1_EUTSA	V4KR25	V4L2Q1	Uncharacterized protein.	Uncharacterized protein.	0.829
V4KR25_EUTSA	V4L5L4_EUTSA	V4KR25	V4L5L4	Uncharacterized protein.	Uncharacterized protein.	0.928
V4KR25_EUTSA	V4LAZ3_EUTSA	V4KR25	V4LAZ3	Uncharacterized protein.	Uncharacterized protein.	0.886
V4KR25_EUTSA	V4LIJ0_EUTSA	V4KR25	V4LIJ0	Uncharacterized protein.	Uncharacterized protein.	0.964
V4KR25_EUTSA	V4LIJ7_EUTSA	V4KR25	V4LIJ7	Uncharacterized protein.	Uncharacterized protein.	0.958

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