(43 nodes) Longin-like domain superfamily network (Eutrema salsugineum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4LG54_EUTSA	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (181 aa)
	V4LF50_EUTSA	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (184 aa)
	V4LEQ6_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (221 aa)
	V4LIF4_EUTSA	Uncharacterized protein. (135 aa)
	V4LJB0_EUTSA	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (142 aa)
	V4LLF2_EUTSA	Longin domain-containing protein; Belongs to the synaptobrevin family. (215 aa)
	V4LML3_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (221 aa)
	V4LDD2_EUTSA	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (526 aa)
	V4LBP2_EUTSA	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (438 aa)
	V4L6N6_EUTSA	Uncharacterized protein. (140 aa)
	V4L4I3_EUTSA	Longin domain-containing protein; Belongs to the synaptobrevin family. (258 aa)
	V4NUC0_EUTSA	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
	V4NVD0_EUTSA	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (161 aa)
	V4P2J5_EUTSA	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (161 aa)
	V4LMQ6_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (248 aa)
	V4LSG2_EUTSA	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (166 aa)
	V4LY66_EUTSA	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	V4M3N8_EUTSA	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (99 aa)
	V4M9U8_EUTSA	Uncharacterized protein. (140 aa)
	V4MCJ5_EUTSA	SRP54 domain-containing protein. (633 aa)
	V4MEF8_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (198 aa)
	V4MEG4_EUTSA	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (451 aa)
	V4MGA1_EUTSA	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (169 aa)
	V4MH63_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (221 aa)
	V4MP68_EUTSA	Longin domain-containing protein; Belongs to the synaptobrevin family. (265 aa)
	V4N9Y0_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (199 aa)
	V4NBC9_EUTSA	Uncharacterized protein. (270 aa)
	V4L409_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (240 aa)
	V4L031_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (218 aa)
	V4KZ01_EUTSA	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (147 aa)
	V4KYI2_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	V4KWP8_EUTSA	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (428 aa)
	V4KQE4_EUTSA	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (108 aa)
	V4P3H3_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (219 aa)
	V4P4S7_EUTSA	Uncharacterized protein. (264 aa)
	V4P8F1_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (222 aa)
	V4KPV1_EUTSA	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (428 aa)
	V4KHX8_EUTSA	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	V4KFA3_EUTSA	Uncharacterized protein; Belongs to the synaptobrevin family. (219 aa)
	V4KEX3_EUTSA	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (415 aa)
	V4KDZ3_EUTSA	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (177 aa)
	V4K7U1_EUTSA	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (147 aa)
	V4JPK7_EUTSA	Uncharacterized protein. (151 aa)

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4JPK7_EUTSA	V4KQE4_EUTSA	V4JPK7	V4KQE4	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.972
V4JPK7_EUTSA	V4L031_EUTSA	V4JPK7	V4L031	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.502
V4JPK7_EUTSA	V4L6N6_EUTSA	V4JPK7	V4L6N6	Uncharacterized protein.	Uncharacterized protein.	0.971
V4JPK7_EUTSA	V4LJB0_EUTSA	V4JPK7	V4LJB0	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.972
V4JPK7_EUTSA	V4LLF2_EUTSA	V4JPK7	V4LLF2	Uncharacterized protein.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.502
V4JPK7_EUTSA	V4M9U8_EUTSA	V4JPK7	V4M9U8	Uncharacterized protein.	Uncharacterized protein.	0.971
V4JPK7_EUTSA	V4MEF8_EUTSA	V4JPK7	V4MEF8	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.502
V4JPK7_EUTSA	V4MGA1_EUTSA	V4JPK7	V4MGA1	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.991
V4JPK7_EUTSA	V4N9Y0_EUTSA	V4JPK7	V4N9Y0	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.851
V4K7U1_EUTSA	V4LDD2_EUTSA	V4K7U1	V4LDD2	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.528
V4KDZ3_EUTSA	V4L031_EUTSA	V4KDZ3	V4L031	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.501
V4KDZ3_EUTSA	V4LDD2_EUTSA	V4KDZ3	V4LDD2	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.989
V4KDZ3_EUTSA	V4LLF2_EUTSA	V4KDZ3	V4LLF2	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.501
V4KDZ3_EUTSA	V4MEF8_EUTSA	V4KDZ3	V4MEF8	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.501
V4KDZ3_EUTSA	V4N9Y0_EUTSA	V4KDZ3	V4N9Y0	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.701
V4KEX3_EUTSA	V4KHX8_EUTSA	V4KEX3	V4KHX8	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.542
V4KEX3_EUTSA	V4KPV1_EUTSA	V4KEX3	V4KPV1	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.443
V4KEX3_EUTSA	V4KWP8_EUTSA	V4KEX3	V4KWP8	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.443
V4KEX3_EUTSA	V4LBP2_EUTSA	V4KEX3	V4LBP2	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.662
V4KEX3_EUTSA	V4LSG2_EUTSA	V4KEX3	V4LSG2	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.896

page 1 of 14

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About