(35 nodes) Ribosomal protein L2, domain 2 network (Eutrema salsugineum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4KWZ2_EUTSA	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (159 aa)
	V4L4Y4_EUTSA	Ribosomal_L2_C domain-containing protein. (259 aa)
	V4L527_EUTSA	Transcription elongation factor SPT5. (1034 aa)
	V4L597_EUTSA	Ribosomal_L6e_N domain-containing protein. (234 aa)
	V4LGA1_EUTSA	Uncharacterized protein. (46 aa)
	V4LJE1_EUTSA	S4 RNA-binding domain-containing protein. (312 aa)
	V4LJF0_EUTSA	Ribosomal_L2_C domain-containing protein. (258 aa)
	V4LJP8_EUTSA	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	V4LKJ1_EUTSA	Uncharacterized protein. (690 aa)
	V4LP45_EUTSA	KOW domain-containing protein. (187 aa)
	V4LSA8_EUTSA	Ribosomal_L2_C domain-containing protein. (258 aa)
	V4LT28_EUTSA	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (198 aa)
	V4LWV2_EUTSA	Ribosomal_L2_C domain-containing protein. (279 aa)
	V4LZA6_EUTSA	Uncharacterized protein. (238 aa)
	V4M0P4_EUTSA	Uncharacterized protein. (242 aa)
	V4M2R9_EUTSA	NGN domain-containing protein. (337 aa)
	V4M2X5_EUTSA	Ribosomal_L14e domain-containing protein. (193 aa)
	V4MBJ9_EUTSA	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (288 aa)
	V4MIG3_EUTSA	Uncharacterized protein. (47 aa)
	V4MKS2_EUTSA	KOW domain-containing protein. (146 aa)
	V4MQG7_EUTSA	Uncharacterized protein. (148 aa)
	V4KD90_EUTSA	Ribosomal_L6e_N domain-containing protein. (233 aa)
	V4N1E9_EUTSA	Ribosomal_L2_C domain-containing protein. (267 aa)
	V4N3Y3_EUTSA	Uncharacterized protein. (229 aa)
	V4N5A4_EUTSA	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	V4NYL5_EUTSA	Uncharacterized protein. (797 aa)
	V4P522_EUTSA	Ribosomal_L14e domain-containing protein. (134 aa)
	V4K9N0_EUTSA	Ribosomal_L6e_N domain-containing protein. (233 aa)
	V4KDZ6_EUTSA	Uncharacterized protein. (238 aa)
	V4KEQ8_EUTSA	Eukaryotic translation initiation factor 5A. (158 aa)
	V4KJ73_EUTSA	Uncharacterized protein. (66 aa)
	V4KMD4_EUTSA	Ribosomal_L2_C domain-containing protein. (222 aa)
	V4KRC3_EUTSA	Kin17_mid domain-containing protein. (414 aa)
	V4KSK5_EUTSA	Eukaryotic translation initiation factor 5A. (159 aa)
	V4KZF6_EUTSA	Eukaryotic translation initiation factor 5A. (158 aa)

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4K9N0_EUTSA	V4KD90_EUTSA	V4K9N0	V4KD90	Ribosomal_L6e_N domain-containing protein.	Ribosomal_L6e_N domain-containing protein.	0.900
V4K9N0_EUTSA	V4KDZ6_EUTSA	V4K9N0	V4KDZ6	Ribosomal_L6e_N domain-containing protein.	Uncharacterized protein.	0.471
V4K9N0_EUTSA	V4KEQ8_EUTSA	V4K9N0	V4KEQ8	Ribosomal_L6e_N domain-containing protein.	Eukaryotic translation initiation factor 5A.	0.781
V4K9N0_EUTSA	V4KJ73_EUTSA	V4K9N0	V4KJ73	Ribosomal_L6e_N domain-containing protein.	Uncharacterized protein.	0.975
V4K9N0_EUTSA	V4KMD4_EUTSA	V4K9N0	V4KMD4	Ribosomal_L6e_N domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.675
V4K9N0_EUTSA	V4KSK5_EUTSA	V4K9N0	V4KSK5	Ribosomal_L6e_N domain-containing protein.	Eukaryotic translation initiation factor 5A.	0.781
V4K9N0_EUTSA	V4KZF6_EUTSA	V4K9N0	V4KZF6	Ribosomal_L6e_N domain-containing protein.	Eukaryotic translation initiation factor 5A.	0.781
V4K9N0_EUTSA	V4L4Y4_EUTSA	V4K9N0	V4L4Y4	Ribosomal_L6e_N domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.962
V4K9N0_EUTSA	V4L597_EUTSA	V4K9N0	V4L597	Ribosomal_L6e_N domain-containing protein.	Ribosomal_L6e_N domain-containing protein.	0.905
V4K9N0_EUTSA	V4LGA1_EUTSA	V4K9N0	V4LGA1	Ribosomal_L6e_N domain-containing protein.	Uncharacterized protein.	0.781
V4K9N0_EUTSA	V4LJE1_EUTSA	V4K9N0	V4LJE1	Ribosomal_L6e_N domain-containing protein.	S4 RNA-binding domain-containing protein.	0.843
V4K9N0_EUTSA	V4LJF0_EUTSA	V4K9N0	V4LJF0	Ribosomal_L6e_N domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.962
V4K9N0_EUTSA	V4LJP8_EUTSA	V4K9N0	V4LJP8	Ribosomal_L6e_N domain-containing protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.843
V4K9N0_EUTSA	V4LP45_EUTSA	V4K9N0	V4LP45	Ribosomal_L6e_N domain-containing protein.	KOW domain-containing protein.	0.975
V4K9N0_EUTSA	V4LSA8_EUTSA	V4K9N0	V4LSA8	Ribosomal_L6e_N domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.962
V4K9N0_EUTSA	V4LT28_EUTSA	V4K9N0	V4LT28	Ribosomal_L6e_N domain-containing protein.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.819
V4K9N0_EUTSA	V4LWV2_EUTSA	V4K9N0	V4LWV2	Ribosomal_L6e_N domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.675
V4K9N0_EUTSA	V4LZA6_EUTSA	V4K9N0	V4LZA6	Ribosomal_L6e_N domain-containing protein.	Uncharacterized protein.	0.471
V4K9N0_EUTSA	V4M0P4_EUTSA	V4K9N0	V4M0P4	Ribosomal_L6e_N domain-containing protein.	Uncharacterized protein.	0.471
V4K9N0_EUTSA	V4M2X5_EUTSA	V4K9N0	V4M2X5	Ribosomal_L6e_N domain-containing protein.	Ribosomal_L14e domain-containing protein.	0.907

page 1 of 35

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About