(13 nodes) Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) network (Eutrema salsugineum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V4K482_EUTSA	Protein kinase domain-containing protein. (734 aa)
	V4KDV1_EUTSA	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1122 aa)
	V4KXD3_EUTSA	Uncharacterized protein. (609 aa)
	V4L029_EUTSA	Uncharacterized protein. (406 aa)
	V4L567_EUTSA	Uncharacterized protein. (997 aa)
	V4LJH3_EUTSA	Uncharacterized protein. (916 aa)
	V4LZS3_EUTSA	Uncharacterized protein. (767 aa)
	V4M3B1_EUTSA	Uncharacterized protein. (746 aa)
	V4MBC7_EUTSA	PAS domain-containing protein. (623 aa)
	V4MPS8_EUTSA	Uncharacterized protein. (722 aa)
	V4N114_EUTSA	Glutaredoxin domain-containing protein. (646 aa)
	V4NUV1_EUTSA	Uncharacterized protein. (621 aa)
	V4K6L1_EUTSA	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1118 aa)

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4K6L1_EUTSA	V4KXD3_EUTSA	V4K6L1	V4KXD3	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	Uncharacterized protein.	0.555
V4K6L1_EUTSA	V4L567_EUTSA	V4K6L1	V4L567	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	Uncharacterized protein.	0.571
V4K6L1_EUTSA	V4LJH3_EUTSA	V4K6L1	V4LJH3	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	Uncharacterized protein.	0.571
V4K6L1_EUTSA	V4MBC7_EUTSA	V4K6L1	V4MBC7	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	PAS domain-containing protein.	0.555
V4K6L1_EUTSA	V4NUV1_EUTSA	V4K6L1	V4NUV1	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	Uncharacterized protein.	0.568
V4KDV1_EUTSA	V4KXD3_EUTSA	V4KDV1	V4KXD3	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	Uncharacterized protein.	0.601
V4KDV1_EUTSA	V4L567_EUTSA	V4KDV1	V4L567	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	Uncharacterized protein.	0.624
V4KDV1_EUTSA	V4LJH3_EUTSA	V4KDV1	V4LJH3	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	Uncharacterized protein.	0.617
V4KDV1_EUTSA	V4MBC7_EUTSA	V4KDV1	V4MBC7	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	PAS domain-containing protein.	0.610
V4KDV1_EUTSA	V4NUV1_EUTSA	V4KDV1	V4NUV1	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	Uncharacterized protein.	0.601
V4KXD3_EUTSA	V4K6L1_EUTSA	V4KXD3	V4K6L1	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.555
V4KXD3_EUTSA	V4KDV1_EUTSA	V4KXD3	V4KDV1	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.601
V4L567_EUTSA	V4K6L1_EUTSA	V4L567	V4K6L1	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.571
V4L567_EUTSA	V4KDV1_EUTSA	V4L567	V4KDV1	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.624
V4LJH3_EUTSA	V4K6L1_EUTSA	V4LJH3	V4K6L1	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.571
V4LJH3_EUTSA	V4KDV1_EUTSA	V4LJH3	V4KDV1	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.617
V4MBC7_EUTSA	V4K6L1_EUTSA	V4MBC7	V4K6L1	PAS domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.555
V4MBC7_EUTSA	V4KDV1_EUTSA	V4MBC7	V4KDV1	PAS domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.610
V4NUV1_EUTSA	V4K6L1_EUTSA	V4NUV1	V4K6L1	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.568
V4NUV1_EUTSA	V4KDV1_EUTSA	V4NUV1	V4KDV1	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.601

Server load: low (32%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About