(6 nodes) Mixed, incl. Ribosome binding, and ParB-like nuclease domain network (Staphylococcus capitis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKL91580.1	Hypothetical protein. (63 aa)
	typA	Tyrosine phosphorylated protein A. (615 aa)
	parB	Putative chromosome-partitioning protein ParB; Belongs to the ParB family. (276 aa)
	ykuT	Putative MscS family protein YkuT. (293 aa)
	AKL93207.1	Hypothetical protein. (67 aa)
	ychF	Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (365 aa)

Your Current Organism:

Staphylococcus capitis

NCBI taxonomy Id: 72758
Other names: S. capitis subsp. capitis, Staphylococcus capitis subsp. capitis

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKL91580.1	typA	AYP1020_0432	AYP1020_0433	Hypothetical protein.	Tyrosine phosphorylated protein A.	0.805
AKL93207.1	parB	AYP1020_2119	AYP1020_2117	Hypothetical protein.	Putative chromosome-partitioning protein ParB; Belongs to the ParB family.	0.805
AKL93207.1	ychF	AYP1020_2119	AYP1020_2120	Hypothetical protein.	Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	0.925
AKL93207.1	ykuT	AYP1020_2119	AYP1020_2118	Hypothetical protein.	Putative MscS family protein YkuT.	0.857
parB	AKL93207.1	AYP1020_2117	AYP1020_2119	Putative chromosome-partitioning protein ParB; Belongs to the ParB family.	Hypothetical protein.	0.805
parB	ychF	AYP1020_2117	AYP1020_2120	Putative chromosome-partitioning protein ParB; Belongs to the ParB family.	Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	0.820
parB	ykuT	AYP1020_2117	AYP1020_2118	Putative chromosome-partitioning protein ParB; Belongs to the ParB family.	Putative MscS family protein YkuT.	0.840
typA	AKL91580.1	AYP1020_0433	AYP1020_0432	Tyrosine phosphorylated protein A.	Hypothetical protein.	0.805
typA	ychF	AYP1020_0433	AYP1020_2120	Tyrosine phosphorylated protein A.	Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	0.567
ychF	AKL93207.1	AYP1020_2120	AYP1020_2119	Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	Hypothetical protein.	0.925
ychF	parB	AYP1020_2120	AYP1020_2117	Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	Putative chromosome-partitioning protein ParB; Belongs to the ParB family.	0.820
ychF	typA	AYP1020_2120	AYP1020_0433	Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	Tyrosine phosphorylated protein A.	0.567
ychF	ykuT	AYP1020_2120	AYP1020_2118	Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	Putative MscS family protein YkuT.	0.848
ykuT	AKL93207.1	AYP1020_2118	AYP1020_2119	Putative MscS family protein YkuT.	Hypothetical protein.	0.857
ykuT	parB	AYP1020_2118	AYP1020_2117	Putative MscS family protein YkuT.	Putative chromosome-partitioning protein ParB; Belongs to the ParB family.	0.840
ykuT	ychF	AYP1020_2118	AYP1020_2120	Putative MscS family protein YkuT.	Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.	0.848