(26 nodes) Vesicle tethering complex network (Plasmodium yoelii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PY07542	Homo sapiens A_IG002N01.1 gene product, putative. (379 aa)
	PY02475	41 kDa antigen-related. (58 aa)
	PY02776	Ring-infested erythrocyte surface antigen, putative. (542 aa)
	PY03107	Vacuolar membrane protein pep3. (1399 aa)
	PY03378	cDNA EST yk491a11.5 comes from this gene, putative. (207 aa)
	PY02102	AMMECR1 domain-containing protein. (231 aa)
	PY02193	Uncharacterized protein. (286 aa)
	PY03434	Uncharacterized protein. (275 aa)
	PY00655	Uncharacterized protein. (124 aa)
	PY00656	COG2 domain-containing protein. (319 aa)
	PY01372	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (723 aa)
	PY04374	Expressed protein. (1097 aa)
	PY04375	Uncharacterized protein. (81 aa)
	PY04408	Lactamase_B domain-containing protein. (425 aa)
	PY04582	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (133 aa)
	PY05174	41-2 protein antigen-related. (115 aa)
	PY06123	Uncharacterized protein. (856 aa)
	PY05729	Uncharacterized protein. (153 aa)
	PY02194	Uncharacterized protein. (1540 aa)
	PY02218	VCL1. (965 aa)
	PY02417	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (187 aa)
	PY06458	Vps39_2 domain-containing protein. (373 aa)
	PY06525	Uncharacterized protein. (490 aa)
	PY06640	Arabidopsis thaliana At1g71270/F3I17_8. (1050 aa)
	PY07060	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (195 aa)
	PY07085	CNH domain-containing protein. (945 aa)

Your Current Organism:

Plasmodium yoelii

NCBI taxonomy Id: 73239
Other names: P. yoelii yoelii, Plasmodium yoelii subsp. yoelii, Plasmodium yoelii yoelii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PY00655	PY00656	Q7RRR3	Q7RRR2	Uncharacterized protein.	COG2 domain-containing protein.	0.566
PY00655	PY02776	Q7RRR3	Q7RKX3	Uncharacterized protein.	Ring-infested erythrocyte surface antigen, putative.	0.659
PY00655	PY03434	Q7RRR3	Q7RJ30	Uncharacterized protein.	Uncharacterized protein.	0.905
PY00655	PY06525	Q7RRR3	Q7RAH5	Uncharacterized protein.	Uncharacterized protein.	0.659
PY00655	PY06640	Q7RRR3	Q7RA63	Uncharacterized protein.	Arabidopsis thaliana At1g71270/F3I17_8.	0.749
PY00655	PY07542	Q7RRR3	Q7R7P0	Uncharacterized protein.	Homo sapiens A_IG002N01.1 gene product, putative.	0.905
PY00656	PY00655	Q7RRR2	Q7RRR3	COG2 domain-containing protein.	Uncharacterized protein.	0.566
PY00656	PY02776	Q7RRR2	Q7RKX3	COG2 domain-containing protein.	Ring-infested erythrocyte surface antigen, putative.	0.659
PY00656	PY03434	Q7RRR2	Q7RJ30	COG2 domain-containing protein.	Uncharacterized protein.	0.905
PY00656	PY06525	Q7RRR2	Q7RAH5	COG2 domain-containing protein.	Uncharacterized protein.	0.659
PY00656	PY06640	Q7RRR2	Q7RA63	COG2 domain-containing protein.	Arabidopsis thaliana At1g71270/F3I17_8.	0.749
PY00656	PY07542	Q7RRR2	Q7R7P0	COG2 domain-containing protein.	Homo sapiens A_IG002N01.1 gene product, putative.	0.905
PY02193	PY02194	Q7RMI7	Q7RMI6	Uncharacterized protein.	Uncharacterized protein.	0.549
PY02193	PY02417	Q7RMI7	Q7RLX1	Uncharacterized protein.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.976
PY02193	PY02475	Q7RMI7	Q7RLR5	Uncharacterized protein.	41 kDa antigen-related.	0.919
PY02193	PY03378	Q7RMI7	Q7RJ85	Uncharacterized protein.	cDNA EST yk491a11.5 comes from this gene, putative.	0.977
PY02193	PY04375	Q7RMI7	Q7RGH2	Uncharacterized protein.	Uncharacterized protein.	0.821
PY02193	PY04582	Q7RMI7	Q7RFX0	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.974
PY02193	PY05174	Q7RMI7	Q7RE91	Uncharacterized protein.	41-2 protein antigen-related.	0.919
PY02193	PY05729	Q7RMI7	Q7RCP8	Uncharacterized protein.	Uncharacterized protein.	0.977