(50 nodes) COPII-mediated vesicle transport network (Plasmodium yoelii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PY04059	t-SNARE coiled-coil homology domain-containing protein. (395 aa)
	PY01811	t-SNARE coiled-coil homology domain-containing protein. (177 aa)
	PY01819	V-SNARE coiled-coil homology domain-containing protein. (62 aa)
	PY01820	Longin domain-containing protein; Belongs to the synaptobrevin family. (128 aa)
	PY02071	Uncharacterized protein. (274 aa)
	PY02153	WD_REPEATS_REGION domain-containing protein. (423 aa)
	PY02284	Serine/threonine-protein phosphatase. (308 aa)
	PY02377	Uncharacterized protein. (100 aa)
	PY02378	t-SNARE coiled-coil homology domain-containing protein. (252 aa)
	PY02417	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (187 aa)
	PY02464	Uncharacterized protein. (593 aa)
	PY02475	41 kDa antigen-related. (58 aa)
	PY02496	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (109 aa)
	PY02497	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (676 aa)
	PY02704	Arabinogalactan protein. (265 aa)
	PY02819	Rab1 protein. (207 aa)
	PY03156	CCAAT-box DNA binding protein subunit B, putative. (1176 aa)
	PY03308	Similar to chromosome 11 open reading frame 23. (1060 aa)
	PY03378	cDNA EST yk491a11.5 comes from this gene, putative. (207 aa)
	PY03484	t-SNARE coiled-coil homology domain-containing protein. (333 aa)
	PY03775	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (426 aa)
	PY03887	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	PY03895	Putative Sec24-like protein. (1396 aa)
	PY03930	WD_REPEATS_REGION domain-containing protein. (1249 aa)
	PY03931	Uncharacterized protein. (185 aa)
	PY04147	L-type lectin-like domain-containing protein. (499 aa)
	PY04299	Beta-soluble nsf attachment protein. (236 aa)
	PY04318	Rhoptry protein, putative. (2823 aa)
	PY04367	Small GTP-binding protein; Belongs to the small GTPase superfamily. SAR1 family. (185 aa)
	PY04476	TPR_REGION domain-containing protein. (1297 aa)
	PY04582	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (133 aa)
	PY04867	Uncharacterized protein. (504 aa)
	PY05174	41-2 protein antigen-related. (115 aa)
	PY06648	Arabidopsis thaliana BRAHMA ortholog. (632 aa)
	PY04504	TPR Domain, putative. (729 aa)
	PY07410	Syntaxin 5. (173 aa)
	PY07060	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (195 aa)
	PY07007	Syntaxin 5. (140 aa)
	PY07006	Uncharacterized protein. (78 aa)
	PY06850	Uncharacterized protein. (673 aa)
	PY05729	Uncharacterized protein. (153 aa)
	PY05628	ATPase, AAA family, putative. (776 aa)
	PY05434	Uncharacterized protein. (869 aa)
	PY05387	Uncharacterized protein. (198 aa)
	PY00109	Cysteine proteinase; Belongs to the peptidase C1 family. (520 aa)
	PY00331	Uncharacterized protein. (2747 aa)
	PY00354	Uncharacterized protein. (759 aa)
	PY00467	Sec1 family; Belongs to the STXBP/unc-18/SEC1 family. (643 aa)
	PY01094	Uncharacterized protein. (963 aa)
	PY01574	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (597 aa)

Your Current Organism:

Plasmodium yoelii

NCBI taxonomy Id: 73239
Other names: P. yoelii yoelii, Plasmodium yoelii subsp. yoelii, Plasmodium yoelii yoelii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PY00109	PY01574	Q7RT85	Q7RP85	Cysteine proteinase; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.441
PY00109	PY01819	Q7RT85	Q7RNJ7	Cysteine proteinase; Belongs to the peptidase C1 family.	V-SNARE coiled-coil homology domain-containing protein.	0.447
PY00109	PY01820	Q7RT85	Q7RNJ6	Cysteine proteinase; Belongs to the peptidase C1 family.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.447
PY00109	PY02496	Q7RT85	Q7RLP4	Cysteine proteinase; Belongs to the peptidase C1 family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.455
PY00109	PY02497	Q7RT85	Q7RLP3	Cysteine proteinase; Belongs to the peptidase C1 family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.455
PY00109	PY03775	Q7RT85	Q7RI55	Cysteine proteinase; Belongs to the peptidase C1 family.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.441
PY00109	PY03887	Q7RT85	Q7RHU6	Cysteine proteinase; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.427
PY00109	PY03930	Q7RT85	Q7RHQ4	Cysteine proteinase; Belongs to the peptidase C1 family.	WD_REPEATS_REGION domain-containing protein.	0.438
PY00109	PY03931	Q7RT85	Q7RHQ3	Cysteine proteinase; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.438
PY00109	PY04147	Q7RT85	Q7RH46	Cysteine proteinase; Belongs to the peptidase C1 family.	L-type lectin-like domain-containing protein.	0.666
PY00109	PY04299	Q7RT85	Q7RGP7	Cysteine proteinase; Belongs to the peptidase C1 family.	Beta-soluble nsf attachment protein.	0.424
PY00109	PY04367	Q7RT85	Q7RGI0	Cysteine proteinase; Belongs to the peptidase C1 family.	Small GTP-binding protein; Belongs to the small GTPase superfamily. SAR1 family.	0.432
PY00109	PY05628	Q7RT85	Q7RCZ8	Cysteine proteinase; Belongs to the peptidase C1 family.	ATPase, AAA family, putative.	0.457
PY00354	PY02819	Q7RSK1	Q7RKT1	Uncharacterized protein.	Rab1 protein.	0.793
PY00354	PY06850	Q7RSK1	Q7R9L2	Uncharacterized protein.	Uncharacterized protein.	0.544
PY00467	PY01094	Q7RS95	Q7RQK2	Sec1 family; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.656
PY00467	PY01574	Q7RS95	Q7RP85	Sec1 family; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.551
PY00467	PY01811	Q7RS95	Q7RNK5	Sec1 family; Belongs to the STXBP/unc-18/SEC1 family.	t-SNARE coiled-coil homology domain-containing protein.	0.706
PY00467	PY01819	Q7RS95	Q7RNJ7	Sec1 family; Belongs to the STXBP/unc-18/SEC1 family.	V-SNARE coiled-coil homology domain-containing protein.	0.950
PY00467	PY01820	Q7RS95	Q7RNJ6	Sec1 family; Belongs to the STXBP/unc-18/SEC1 family.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.950