(15 nodes) Mixed, incl. Ribosome biogenesis, and GTP-binding protein, orthogonal bundle domain superfamily network (Musca domestica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1I8M157	Uncharacterized protein. (259 aa)
	A0A1I8M4L4	Uncharacterized protein. (305 aa)
	A0A1I8MF93	TRASH domain-containing protein. (191 aa)
	A0A1I8MTR9	CP-type G domain-containing protein. (580 aa)
	A0A1I8MVC4	Uncharacterized protein. (630 aa)
	A0A1I8N076	Brix domain-containing protein. (356 aa)
	A0A1I8N0G9	Uncharacterized protein; Belongs to the DEAD box helicase family. (691 aa)
	A0A1I8N0R1	RRM domain-containing protein. (391 aa)
	A0A1I8N176	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	A0A1I8N486	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (616 aa)
	A0A1I8N5B9	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (843 aa)
	A0A1I8NAQ4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (263 aa)
	T1PF30_MUSDO	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (674 aa)
	T1PGH7_MUSDO	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (652 aa)
	T1PJQ0_MUSDO	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (428 aa)

Your Current Organism:

Musca domestica

NCBI taxonomy Id: 7370
Other names: house fly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1I8M157	A0A1I8M4L4	A0A1I8M157	A0A1I8M4L4	Uncharacterized protein.	Uncharacterized protein.	0.975
A0A1I8M157	A0A1I8MF93	A0A1I8M157	A0A1I8MF93	Uncharacterized protein.	TRASH domain-containing protein.	0.998
A0A1I8M157	A0A1I8MTR9	A0A1I8M157	A0A1I8MTR9	Uncharacterized protein.	CP-type G domain-containing protein.	0.994
A0A1I8M157	A0A1I8MVC4	A0A1I8M157	A0A1I8MVC4	Uncharacterized protein.	Uncharacterized protein.	0.969
A0A1I8M157	A0A1I8N076	A0A1I8M157	A0A1I8N076	Uncharacterized protein.	Brix domain-containing protein.	0.968
A0A1I8M157	A0A1I8N0G9	A0A1I8M157	A0A1I8N0G9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.990
A0A1I8M157	A0A1I8N0R1	A0A1I8M157	A0A1I8N0R1	Uncharacterized protein.	RRM domain-containing protein.	0.993
A0A1I8M157	A0A1I8N176	A0A1I8M157	A0A1I8N176	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.985
A0A1I8M157	A0A1I8N486	A0A1I8M157	A0A1I8N486	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.997
A0A1I8M157	A0A1I8N5B9	A0A1I8M157	A0A1I8N5B9	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.989
A0A1I8M157	A0A1I8NAQ4	A0A1I8M157	A0A1I8NAQ4	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.997
A0A1I8M157	T1PF30_MUSDO	A0A1I8M157	T1PF30	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.996
A0A1I8M157	T1PGH7_MUSDO	A0A1I8M157	T1PGH7	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.999
A0A1I8M157	T1PJQ0_MUSDO	A0A1I8M157	T1PJQ0	Uncharacterized protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.986
A0A1I8M4L4	A0A1I8M157	A0A1I8M4L4	A0A1I8M157	Uncharacterized protein.	Uncharacterized protein.	0.975
A0A1I8M4L4	A0A1I8MF93	A0A1I8M4L4	A0A1I8MF93	Uncharacterized protein.	TRASH domain-containing protein.	0.988
A0A1I8M4L4	A0A1I8MTR9	A0A1I8M4L4	A0A1I8MTR9	Uncharacterized protein.	CP-type G domain-containing protein.	0.998
A0A1I8M4L4	A0A1I8MVC4	A0A1I8M4L4	A0A1I8MVC4	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A1I8M4L4	A0A1I8N076	A0A1I8M4L4	A0A1I8N076	Uncharacterized protein.	Brix domain-containing protein.	0.999
A0A1I8M4L4	A0A1I8N0G9	A0A1I8M4L4	A0A1I8N0G9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.986