(33 nodes) Ribosome assembly network (Musca domestica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1I8N128	Era-type G domain-containing protein. (391 aa)
	A0A1I8N076	Brix domain-containing protein. (356 aa)
	A0A1I8MYX1	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5677 aa)
	A0A1I8MY38	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (145 aa)
	A0A1I8MXK9	Ribosomal_S7 domain-containing protein. (216 aa)
	A0A1I8MUV4	Brix domain-containing protein. (461 aa)
	A0A1I8MQB5	Uncharacterized protein. (972 aa)
	A0A1I8MP40	Uncharacterized protein. (388 aa)
	A0A1I8MM25	Uncharacterized protein. (529 aa)
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	A0A1I8MDY8	Brix domain-containing protein. (314 aa)
	A0A1I8MDS8	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (196 aa)
	A0A1I8MBG3	Ribosomal_L6e_N domain-containing protein. (262 aa)
	A0A1I8M7C2	Uncharacterized protein. (264 aa)
	A0A1I8M6N1	Tr-type G domain-containing protein. (1035 aa)
	A0A1I8M0N9	Uncharacterized protein. (485 aa)
	A0A1I8NHC3	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family. (150 aa)
	A0A1I8NEG9	WD_REPEATS_REGION domain-containing protein. (490 aa)
	A0A1I8NE31	FtsJ domain-containing protein. (254 aa)
	A0A1I8NBZ7	Uncharacterized protein. (253 aa)
	A0A1I8NAQ4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (263 aa)
	A0A1I8N9I7	40S ribosomal protein S27. (84 aa)
	A0A1I8N8V2	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (216 aa)
	T1P8Q2_MUSDO	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (314 aa)
	A0A1I8N8S0	RRM domain-containing protein. (265 aa)
	A0A1I8N5P4	RRM domain-containing protein. (262 aa)
	A0A1I8N3V1	Uncharacterized protein. (201 aa)
	A0A1I8N176	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	T1PMB2_MUSDO	Ribosomal protein L23; Belongs to the universal ribosomal protein uL23 family. (272 aa)
	T1PFL0_MUSDO	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (276 aa)
	T1PF92_MUSDO	Ribosomal protein S19e. (157 aa)
	T1PEW7_MUSDO	Ribosomal protein S7p/S5e; Belongs to the universal ribosomal protein uS7 family. (227 aa)
	T1PCE2_MUSDO	Ribosomal protein L16p/L10e. (218 aa)

Your Current Organism:

Musca domestica

NCBI taxonomy Id: 7370
Other names: house fly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1I8M0N9	A0A1I8MBG3	A0A1I8M0N9	A0A1I8MBG3	Uncharacterized protein.	Ribosomal_L6e_N domain-containing protein.	0.779
A0A1I8M0N9	A0A1I8MDY8	A0A1I8M0N9	A0A1I8MDY8	Uncharacterized protein.	Brix domain-containing protein.	0.986
A0A1I8M0N9	A0A1I8MM25	A0A1I8M0N9	A0A1I8MM25	Uncharacterized protein.	Uncharacterized protein.	0.456
A0A1I8M0N9	A0A1I8MQB5	A0A1I8M0N9	A0A1I8MQB5	Uncharacterized protein.	Uncharacterized protein.	0.557
A0A1I8M0N9	A0A1I8MUV4	A0A1I8M0N9	A0A1I8MUV4	Uncharacterized protein.	Brix domain-containing protein.	0.880
A0A1I8M0N9	A0A1I8N076	A0A1I8M0N9	A0A1I8N076	Uncharacterized protein.	Brix domain-containing protein.	0.740
A0A1I8M0N9	A0A1I8N176	A0A1I8M0N9	A0A1I8N176	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.837
A0A1I8M0N9	A0A1I8N8S0	A0A1I8M0N9	A0A1I8N8S0	Uncharacterized protein.	RRM domain-containing protein.	0.571
A0A1I8M0N9	A0A1I8NAQ4	A0A1I8M0N9	A0A1I8NAQ4	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.811
A0A1I8M0N9	A0A1I8NE31	A0A1I8M0N9	A0A1I8NE31	Uncharacterized protein.	FtsJ domain-containing protein.	0.791
A0A1I8M0N9	A0A1I8NEG9	A0A1I8M0N9	A0A1I8NEG9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
A0A1I8M0N9	EIF6	A0A1I8M0N9	A0A1I8MIU5	Uncharacterized protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.671
A0A1I8M0N9	T1P8Q2_MUSDO	A0A1I8M0N9	T1P8Q2	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.602
A0A1I8M0N9	T1PCE2_MUSDO	A0A1I8M0N9	T1PCE2	Uncharacterized protein.	Ribosomal protein L16p/L10e.	0.931
A0A1I8M0N9	T1PEW7_MUSDO	A0A1I8M0N9	T1PEW7	Uncharacterized protein.	Ribosomal protein S7p/S5e; Belongs to the universal ribosomal protein uS7 family.	0.526
A0A1I8M0N9	T1PMB2_MUSDO	A0A1I8M0N9	T1PMB2	Uncharacterized protein.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL23 family.	0.977
A0A1I8M6N1	A0A1I8MBG3	A0A1I8M6N1	A0A1I8MBG3	Tr-type G domain-containing protein.	Ribosomal_L6e_N domain-containing protein.	0.703
A0A1I8M6N1	A0A1I8MXK9	A0A1I8M6N1	A0A1I8MXK9	Tr-type G domain-containing protein.	Ribosomal_S7 domain-containing protein.	0.852
A0A1I8M6N1	A0A1I8MY38	A0A1I8M6N1	A0A1I8MY38	Tr-type G domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.939
A0A1I8M6N1	A0A1I8N3V1	A0A1I8M6N1	A0A1I8N3V1	Tr-type G domain-containing protein.	Uncharacterized protein.	0.807