5 items (Lucilia cuprina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FF38_02937	Peptidylprolyl isomerase. (440 aa)
	FF38_03117	Uncharacterized protein. (380 aa)
	FF38_03945	TPR_REGION domain-containing protein. (492 aa)
	FF38_07949	Aha1_N domain-containing protein. (374 aa)
	FF38_07784	Heat shock protein 83. (716 aa)

Your Current Organism:

Lucilia cuprina

NCBI taxonomy Id: 7375
Other names: Australian sheep blowfly, L. cuprina, greenbottle fly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FF38_02937	FF38_03117	A0A0L0BQT3	A0A0L0C8M1	Peptidylprolyl isomerase.	Uncharacterized protein.	0.625
FF38_02937	FF38_03945	A0A0L0BQT3	A0A0L0CD44	Peptidylprolyl isomerase.	TPR_REGION domain-containing protein.	0.899
FF38_02937	FF38_07784	A0A0L0BQT3	A0A0L0CL15	Peptidylprolyl isomerase.	Heat shock protein 83.	0.980
FF38_02937	FF38_07949	A0A0L0BQT3	A0A0L0CKS7	Peptidylprolyl isomerase.	Aha1_N domain-containing protein.	0.686
FF38_03117	FF38_02937	A0A0L0C8M1	A0A0L0BQT3	Uncharacterized protein.	Peptidylprolyl isomerase.	0.625
FF38_03117	FF38_03945	A0A0L0C8M1	A0A0L0CD44	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.868
FF38_03117	FF38_07784	A0A0L0C8M1	A0A0L0CL15	Uncharacterized protein.	Heat shock protein 83.	0.917
FF38_03117	FF38_07949	A0A0L0C8M1	A0A0L0CKS7	Uncharacterized protein.	Aha1_N domain-containing protein.	0.932
FF38_03945	FF38_02937	A0A0L0CD44	A0A0L0BQT3	TPR_REGION domain-containing protein.	Peptidylprolyl isomerase.	0.899
FF38_03945	FF38_03117	A0A0L0CD44	A0A0L0C8M1	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.868
FF38_03945	FF38_07784	A0A0L0CD44	A0A0L0CL15	TPR_REGION domain-containing protein.	Heat shock protein 83.	0.995
FF38_03945	FF38_07949	A0A0L0CD44	A0A0L0CKS7	TPR_REGION domain-containing protein.	Aha1_N domain-containing protein.	0.983
FF38_07784	FF38_02937	A0A0L0CL15	A0A0L0BQT3	Heat shock protein 83.	Peptidylprolyl isomerase.	0.980
FF38_07784	FF38_03117	A0A0L0CL15	A0A0L0C8M1	Heat shock protein 83.	Uncharacterized protein.	0.917
FF38_07784	FF38_03945	A0A0L0CL15	A0A0L0CD44	Heat shock protein 83.	TPR_REGION domain-containing protein.	0.995
FF38_07784	FF38_07949	A0A0L0CL15	A0A0L0CKS7	Heat shock protein 83.	Aha1_N domain-containing protein.	0.967
FF38_07949	FF38_02937	A0A0L0CKS7	A0A0L0BQT3	Aha1_N domain-containing protein.	Peptidylprolyl isomerase.	0.686
FF38_07949	FF38_03117	A0A0L0CKS7	A0A0L0C8M1	Aha1_N domain-containing protein.	Uncharacterized protein.	0.932
FF38_07949	FF38_03945	A0A0L0CKS7	A0A0L0CD44	Aha1_N domain-containing protein.	TPR_REGION domain-containing protein.	0.983
FF38_07949	FF38_07784	A0A0L0CKS7	A0A0L0CL15	Aha1_N domain-containing protein.	Heat shock protein 83.	0.967