STRINGSTRING
BMF94_0656 BMF94_0656 BMF94_6612 BMF94_6612 BMF94_6525 BMF94_6525 BMF94_6368 BMF94_6368 BMF94_3907 BMF94_3907 BMF94_3729 BMF94_3729 BMF94_3355 BMF94_3355 BMF94_3003 BMF94_3003 BMF94_2708 BMF94_2708 BMF94_1842 BMF94_1842 BMF94_1108 BMF94_1108 BMF94_1008 BMF94_1008 BMF94_1045 BMF94_1045 BMF94_0841 BMF94_0841 BMF94_0158 BMF94_0158
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BMF94_0656AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (191 aa)
BMF94_6612AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (217 aa)
BMF94_6525Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (194 aa)
BMF94_6368MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (435 aa)
BMF94_3907Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (563 aa)
BMF94_3729AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
BMF94_3355Uncharacterized protein; Belongs to the synaptobrevin family. (300 aa)
BMF94_3003Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (232 aa)
BMF94_2708SRP54 domain-containing protein. (712 aa)
BMF94_1842Uncharacterized protein. (169 aa)
BMF94_1108MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (508 aa)
BMF94_1008MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (437 aa)
BMF94_1045Uncharacterized protein; Belongs to the synaptobrevin family. (218 aa)
BMF94_0841Putative Biliverdin reductase; Belongs to the synaptobrevin family. (212 aa)
BMF94_0158Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (141 aa)
Your Current Organism:
Rhodotorula taiwanensis
NCBI taxonomy Id: 741276
Other names: A1-01, BCRC 23118, CBS 11729, R. taiwanensis, Rhodotorula sp. BCRC 23118, Rhodotorula taiwanensis Lee & Huang 2011
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.