STRINGSTRING
AEM46418.1 AEM46418.1 AEM46419.1 AEM46419.1 pgk pgk AEM46422.1 AEM46422.1 AEM46423.1 AEM46423.1 AEM46424.1 AEM46424.1 AEM46566.1 AEM46566.1 AEM46986.1 AEM46986.1 pgk-2 pgk-2 AEM46995.1 AEM46995.1 AEM47143.1 AEM47143.1 rpiA rpiA AEM47295.1 AEM47295.1 AEM47398.1 AEM47398.1 ppc ppc AEM48138.1 AEM48138.1 AEM48344.1 AEM48344.1 cbbL cbbL tpiA tpiA fbp fbp AEM49199.1 AEM49199.1 AEM49212.1 AEM49212.1 cbbL-2 cbbL-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AEM46418.1KEGG: afr:AFE_3247 ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (220 aa)
AEM46419.1Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (356 aa)
pgkKEGG: afr:AFE_3250 phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (401 aa)
AEM46422.1KEGG: afr:AFE_3251 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (338 aa)
AEM46423.1Transketolase; KEGG: afe:Lferr_2853 transketolase; TIGRFAM: Transketolase, bacterial-like; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; Belongs to the transketolase family. (665 aa)
AEM46424.1Fructose-1,6-bisphosphatase, class II; KEGG: afr:AFE_3253 fructose 1,6-bisphosphatase II; TIGRFAM: GlpX; PFAM: GlpX. (314 aa)
AEM46566.1Phosphoketolase; KEGG: afr:AFE_2053 putative phosphoketolase; HAMAP: phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal. (814 aa)
AEM46986.1PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: afr:AFE_1802 aldolase. (306 aa)
pgk-2KEGG: afr:AFE_3250 phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (401 aa)
AEM46995.1KEGG: afr:AFE_3251 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (338 aa)
AEM47143.1PFAM: Phosphoribulokinase/uridine kinase; KEGG: afr:AFE_0536 phosphoribulokinase. (290 aa)
rpiARibose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (466 aa)
AEM47295.1PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: afr:AFE_0660 malic enzyme family protein. (412 aa)
AEM47398.1KEGG: afr:AFE_2155 ribulose bisphosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; Belongs to the RuBisCO large chain family. (459 aa)
ppcPhosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (929 aa)
AEM48138.1PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: afr:AFE_1802 aldolase. (306 aa)
AEM48344.1PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: afr:AFE_3052 ribulose bisphosphate carboxylase, small subunit. (118 aa)
cbbLRibulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (473 aa)
tpiATriosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (257 aa)
fbpKEGG: afr:AFE_0189 fructose-1,6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family. (336 aa)
AEM49199.1PFAM: Ketose-bisphosphate aldolase, class-II; Stress responsive alpha-beta barrel; KEGG: afe:Lferr_1374 ketose-bisphosphate aldolase class-II. (393 aa)
AEM49212.1PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: afr:AFE_1690 ribulose bisphosphate carboxylase, small subunit. (110 aa)
cbbL-2Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (473 aa)
Your Current Organism:
Acidithiobacillus ferrivorans
NCBI taxonomy Id: 743299
Other names: A. ferrivorans SS3, Acidithiobacillus ferrivorans SS3, Acidithiobacillus ferrivorans str. SS3, Acidithiobacillus ferrivorans strain SS3
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