STRINGSTRING
ADV26393.1 ADV26393.1 ADV26576.1 ADV26576.1 rnhB rnhB csrA csrA ADV27194.1 ADV27194.1 ADV27294.1 ADV27294.1 rne rne pnp pnp rnhA rnhA xseA xseA bpt bpt xseB xseB ADV28210.1 ADV28210.1 ADV28302.1 ADV28302.1 rhlB rhlB ADV28737.1 ADV28737.1 ADV28751.1 ADV28751.1 deaD deaD ADV25931.1 ADV25931.1 rppH rppH ADV26389.1 ADV26389.1 rph rph ADV26550.1 ADV26550.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ADV26393.1PFAM: YicC-like domain-containing protein; domain of unknown function DUF1732; KEGG: xca:xccb100_0934 hypothetical protein. (287 aa)
ADV26576.1PFAM: S1/P1 nuclease; KEGG: xcb:XC_0908 S1/P1 nuclease; region: S1-P1_nuclease; pfam02265. (284 aa)
rnhBRibonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (233 aa)
csrACarbon storage regulator, CsrA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (68 aa)
ADV27194.1PFAM: lipolytic protein G-D-S-L family; KEGG: aca:ACP_3097 lipase/acylhydrolase domain protein. (370 aa)
ADV27294.1KEGG: xcv:XCV2587 ATP-dependent RNA helicase DbpA; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family. (458 aa)
rneRibonuclease, Rne/Rng family; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (1089 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (701 aa)
rnhARibonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (148 aa)
xseAExodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (451 aa)
bptArginine-tRNA-protein transferase domain protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. (293 aa)
xseBExodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (85 aa)
ADV28210.1PFAM: protein of unknown function DUF1631; KEGG: sml:Smlt0851 hypothetical protein. (795 aa)
ADV28302.1KEGG: xcv:XCV3733 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family. (463 aa)
rhlBDEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. (579 aa)
ADV28737.1Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: xcb:XC_4207 glycosyl hydrolase family 10; region: Glyco_hydro_10; cl01495; SMART: glycoside hydrolase family 10. (380 aa)
ADV28751.1Alpha-glucuronidase; KEGG: pzu:PHZ_c2475 alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; Belongs to the glycosyl hydrolase 67 family. (709 aa)
deaDDEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (616 aa)
ADV25931.1PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xcv:XCV0282 putative extracellular nuclease. (575 aa)
rppHNUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (199 aa)
ADV26389.1PFAM: protein of unknown function DUF1631; KEGG: xac:XAC3401 hypothetical protein. (818 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (241 aa)
ADV26550.1KEGG: smt:Smal_3242 hypothetical protein. (206 aa)
Your Current Organism:
Pseudoxanthomonas suwonensis 111
NCBI taxonomy Id: 743721
Other names: P. suwonensis 11-1, Pseudoxanthomonas suwonensis 11-1, Pseudoxanthomonas suwonensis str. 11-1, Pseudoxanthomonas suwonensis strain 11-1
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