(15 nodes) Monosaccharide catabolic process network (Sphingobacterium sp. 21)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ADZ77018.1	Xylulokinase; KEGG: phe:Phep_3503 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal. (479 aa)
	ADZ77189.1	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family. (553 aa)
	fucI	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose. (587 aa)
	araB	Ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase. (563 aa)
	araA	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (499 aa)
	ADZ78082.1	KEGG: cpi:Cpin_2032 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like. (227 aa)
	ADZ79165.1	PFAM: L-fucose isomerase-like, C-terminal; L-fucose isomerase, N-terminal-2; KEGG: phe:Phep_2798 L-fucose isomerase-like protein. (472 aa)
	ADZ79191.1	Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: sli:Slin_1198 fumarylacetoacetate (FAA) hydrolase. (284 aa)
	ADZ79222.1	Beta-lactamase domain protein; PFAM: Beta-lactamase-like; KEGG: fjo:Fjoh_4699 Zn-dependent hydrolase of the beta-lactamase fold-like protein. (365 aa)
	ADZ79343.1	KEGG: dfe:Dfer_1358 putative metallo-hydrolase/oxidoreductase. (246 aa)
	gpmI	2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (506 aa)
	ADZ79632.1	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); PFAM: Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (223 aa)
	ADZ81071.1	Gluconokinase; KEGG: tpd:Teth39_0600 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; Belongs to the FGGY kinase family. (497 aa)
	ADZ81330.1	Hypothetical protein; KEGG: bay:RBAM_005210 YddR. (126 aa)
	ADZ77017.1	PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; KEGG: phe:Phep_3504 carbohydrate kinase FGGY. (483 aa)

Your Current Organism:

Sphingobacterium sp. 21

NCBI taxonomy Id: 743722
Other names: S. sp. 21

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADZ77017.1	ADZ77018.1	Sph21_0435	Sph21_0436	PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; KEGG: phe:Phep_3504 carbohydrate kinase FGGY.	Xylulokinase; KEGG: phe:Phep_3503 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.	0.951
ADZ77018.1	ADZ77017.1	Sph21_0436	Sph21_0435	Xylulokinase; KEGG: phe:Phep_3503 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.	PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; KEGG: phe:Phep_3504 carbohydrate kinase FGGY.	0.951
ADZ77018.1	ADZ77189.1	Sph21_0436	Sph21_0610	Xylulokinase; KEGG: phe:Phep_3503 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family.	0.915
ADZ77018.1	ADZ79632.1	Sph21_0436	Sph21_3089	Xylulokinase; KEGG: phe:Phep_3503 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); PFAM: Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.918
ADZ77018.1	araB	Sph21_0436	Sph21_1029	Xylulokinase; KEGG: phe:Phep_3503 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.	Ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase.	0.914
ADZ77189.1	ADZ77018.1	Sph21_0610	Sph21_0436	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family.	Xylulokinase; KEGG: phe:Phep_3503 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.	0.915
ADZ77189.1	ADZ79632.1	Sph21_0610	Sph21_3089	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family.	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); PFAM: Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.909
ADZ77189.1	araA	Sph21_0610	Sph21_1031	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family.	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.	0.994
ADZ77189.1	araB	Sph21_0610	Sph21_1029	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family.	Ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase.	0.901
ADZ77189.1	fucI	Sph21_0610	Sph21_0612	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.558
ADZ79632.1	ADZ77018.1	Sph21_3089	Sph21_0436	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); PFAM: Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	Xylulokinase; KEGG: phe:Phep_3503 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.	0.918
ADZ79632.1	ADZ77189.1	Sph21_3089	Sph21_0610	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); PFAM: Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family.	0.909
ADZ79632.1	araB	Sph21_3089	Sph21_1029	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); PFAM: Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	Ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase.	0.904
araA	ADZ77189.1	Sph21_1031	Sph21_0610	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family.	0.994
araA	araB	Sph21_1031	Sph21_1029	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.	Ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase.	0.997
araB	ADZ77018.1	Sph21_1029	Sph21_0436	Ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase.	Xylulokinase; KEGG: phe:Phep_3503 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.	0.914
araB	ADZ77189.1	Sph21_1029	Sph21_0610	Ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase.	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family.	0.901
araB	ADZ79632.1	Sph21_1029	Sph21_3089	Ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase.	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); PFAM: Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.904
araB	araA	Sph21_1029	Sph21_1031	Ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase.	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.	0.997
fucI	ADZ77189.1	Sph21_0612	Sph21_0610	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; Belongs to the ribulokinase family.	0.558