(5 nodes) Mixed, incl. DNA replication, synthesis of RNA primer, and Haloacid dehalogenase-like hydrolase network (Mycoplasma flocculare)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MYF_01355	Chromosome replication initiation and membrane attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	MYF_01360	COF family HAD hydrolase protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	MYF_01365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)
	MYF_01370	P60-like lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	MYF_01375	HIT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)

Your Current Organism:

Mycoplasma flocculare

NCBI taxonomy Id: 743971
Other names: M. flocculare ATCC 27399, Mycoplasma flocculare ATCC 27399, Mycoplasma flocculare Ms42, Mycoplasma flocculare str. ATCC 27399, Mycoplasma flocculare strain ATCC 27399

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a tab-delimited file containing all known functional terms of protiens in your network

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node1	node2	node1 annotation	node2 annotation	score
MYF_01355	MYF_01360	Chromosome replication initiation and membrane attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	COF family HAD hydrolase protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
MYF_01355	MYF_01365	Chromosome replication initiation and membrane attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
MYF_01355	MYF_01370	Chromosome replication initiation and membrane attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	P60-like lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
MYF_01355	MYF_01375	Chromosome replication initiation and membrane attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	HIT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
MYF_01360	MYF_01355	COF family HAD hydrolase protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome replication initiation and membrane attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
MYF_01360	MYF_01365	COF family HAD hydrolase protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
MYF_01360	MYF_01370	COF family HAD hydrolase protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	P60-like lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
MYF_01360	MYF_01375	COF family HAD hydrolase protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	HIT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
MYF_01365	MYF_01355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome replication initiation and membrane attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
MYF_01365	MYF_01360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	COF family HAD hydrolase protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
MYF_01365	MYF_01370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	P60-like lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
MYF_01365	MYF_01375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	HIT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
MYF_01370	MYF_01355	P60-like lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome replication initiation and membrane attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
MYF_01370	MYF_01360	P60-like lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	COF family HAD hydrolase protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
MYF_01370	MYF_01365	P60-like lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
MYF_01370	MYF_01375	P60-like lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	HIT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
MYF_01375	MYF_01355	HIT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome replication initiation and membrane attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
MYF_01375	MYF_01360	HIT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	COF family HAD hydrolase protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
MYF_01375	MYF_01365	HIT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
MYF_01375	MYF_01370	HIT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	P60-like lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767