STRINGSTRING
dacA dacA pyrF pyrF AFL79815.1 AFL79815.1 murQ murQ AFL79774.1 AFL79774.1 AFL79763.1 AFL79763.1 deoC deoC lysA lysA AFL81156.1 AFL81156.1 purK purK AFL81260.1 AFL81260.1 AFL81268.1 AFL81268.1 hutU hutU AFL81296.1 AFL81296.1 AFL81311.1 AFL81311.1 AFL81316.1 AFL81316.1 AFL81324.1 AFL81324.1 eno eno AFL81486.1 AFL81486.1 AFL79987.1 AFL79987.1 AFL81600.1 AFL81600.1 AFL81648.1 AFL81648.1 mltG mltG AFL81878.1 AFL81878.1 AFL81905.1 AFL81905.1 tal tal AFL81992.1 AFL81992.1 AFL82028.1 AFL82028.1 menB menB nnrD nnrD aroQ aroQ AFL82094.1 AFL82094.1 lpxC lpxC hisB hisB hisH hisH hisF hisF AFL82161.1 AFL82161.1 aroC aroC AFL82204.1 AFL82204.1 AFL82241.1 AFL82241.1 nth nth AFL82291.1 AFL82291.1 AFL82299.1 AFL82299.1 AFL82330.1 AFL82330.1 AFL82369.1 AFL82369.1 AFL82374.1 AFL82374.1 AFL82402.1 AFL82402.1 fumC fumC AFL82493.1 AFL82493.1 AFL79956.1 AFL79956.1 ribB ribB AFL82568.1 AFL82568.1 AFL82659.1 AFL82659.1 dapA dapA AFL80040.1 AFL80040.1 queE queE AFL80122.1 AFL80122.1 AFL80134.1 AFL80134.1 AFL80152.1 AFL80152.1 trpC trpC trpB trpB trpA trpA dsdA dsdA AFL80264.1 AFL80264.1 AFL80278.1 AFL80278.1 AFL80326.1 AFL80326.1 AFL80387.1 AFL80387.1 AFL80418.1 AFL80418.1 AFL80433.1 AFL80433.1 AFL80434.1 AFL80434.1 AFL80442.1 AFL80442.1 AFL80527.1 AFL80527.1 AFL80560.1 AFL80560.1 AFL80729.1 AFL80729.1 hemH hemH AFL80805.1 AFL80805.1 hemE hemE AFL80811.1 AFL80811.1 panD panD pckA pckA AFL81041.1 AFL81041.1 AFL81050.1 AFL81050.1 AFL81111.1 AFL81111.1 AFL81112.1 AFL81112.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dacAHypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (257 aa)
pyrFPFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2; Belongs to the OMP decarboxylase family. Type 2 subfamily. (273 aa)
AFL79815.1Aconitate hydratase; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, mitochondrial. (754 aa)
murQN-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. (271 aa)
AFL79774.1Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme. (391 aa)
AFL79763.1Putative lactoylglutathione lyase. (136 aa)
deoCDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (223 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (401 aa)
AFL81156.1TIGRFAM: diphosphomevalonate decarboxylase. (370 aa)
purK5-(carboxyamino)imidazole ribonucleotide synthase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR). (384 aa)
AFL81260.1enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family; TIGRFAM: phenylacetate degradation probable enoyl-CoA hydratase paaB; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
AFL81268.1enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family; Belongs to the enoyl-CoA hydratase/isomerase family. (250 aa)
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (660 aa)
AFL81296.1Hypothetical protein; Manually curated. (56 aa)
AFL81311.1O-acetylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase. (431 aa)
AFL81316.1Threonine dehydratase; PFAM: Pyridoxal-phosphate dependent enzyme. (313 aa)
AFL81324.1PFAM: Prephenate dehydratase. (290 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (428 aa)
AFL81486.1PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein. (136 aa)
AFL79987.1Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase. (361 aa)
AFL81600.1PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein. (136 aa)
AFL81648.1PFAM: Pterin 4 alpha carbinolamine dehydratase. (93 aa)
mltGHypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (347 aa)
AFL81878.1PFAM: FAD binding domain of DNA photolyase; DNA photolyase. (434 aa)
AFL81905.1PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (447 aa)
talFructose-6-phosphate aldolase, TalC/MipB family; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (217 aa)
AFL81992.1PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade. (433 aa)
AFL82028.1PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form. (474 aa)
menBDihydroxynaphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. (279 aa)
nnrDyjeF-like protein, hydroxyethylthiazole kinase-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate d [...] (512 aa)
aroQ3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. (138 aa)
AFL82094.13-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). (356 aa)
lpxCBeta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily. (468 aa)
hisBPFAM: Imidazoleglycerol-phosphate dehydratase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase family domain; histidinol-phosphatase; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family. (378 aa)
hisHImidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (193 aa)
hisFImidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (251 aa)
AFL82161.13-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: FabA-like domain. (149 aa)
aroCChorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (354 aa)
AFL82204.1PFAM: Carbonic anhydrase. (253 aa)
AFL82241.1TIGR02757 family protein; PFAM: Protein of unknown function (DUF2400); TIGRFAM: TIGR02757 family protein. (254 aa)
nthPutative endoIII-related endonuclease; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (221 aa)
AFL82291.1PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase. (503 aa)
AFL82299.1Hypothetical protein. (244 aa)
AFL82330.1PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain. (919 aa)
AFL82369.1dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (351 aa)
AFL82374.1dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (350 aa)
AFL82402.1Threonine aldolase; PFAM: Beta-eliminating lyase. (341 aa)
fumCFumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (461 aa)
AFL82493.1Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme. (399 aa)
AFL79956.1PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein. (216 aa)
ribB3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. (399 aa)
AFL82568.1Cryptochrome, DASH family; PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: cryptochrome, DASH family. (474 aa)
AFL82659.1Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (408 aa)
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (291 aa)
AFL80040.1Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. (355 aa)
queEOrganic radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. (209 aa)
AFL80122.1Hypothetical protein. (176 aa)
AFL80134.1PFAM: Carbonic anhydrase. (215 aa)
AFL80152.1PFAM: chorismate binding enzyme; Anthranilate synthase component I, N terminal region. (465 aa)
trpCPFAM: Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. (260 aa)
trpBTryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (393 aa)
trpATryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. (255 aa)
dsdAD-serine ammonia-lyase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: D-serine ammonia-lyase; Belongs to the serine/threonine dehydratase family. DsdA subfamily. (445 aa)
AFL80264.1Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (927 aa)
AFL80278.1PLP-dependent enzyme, glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase conserved domain. (479 aa)
AFL80326.1PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain. (465 aa)
AFL80387.1Putative integral membrane protein; PFAM: VanZ like family. (124 aa)
AFL80418.13-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: FabA-like domain. (121 aa)
AFL80433.1Putative 3-hydroxylacyl-(acyl carrier protein) dehydratase. (152 aa)
AFL80434.1Hypothetical protein. (145 aa)
AFL80442.1PFAM: Phenylalanine and histidine ammonia-lyase. (506 aa)
AFL80527.1PFAM: Vitamin K-dependent gamma-carboxylase. (446 aa)
AFL80560.1PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein. (186 aa)
AFL80729.1Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. (118 aa)
hemHFerrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (346 aa)
AFL80805.1PFAM: Uroporphyrinogen-III synthase HemD. (222 aa)
hemEUroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. (342 aa)
AFL80811.1PFAM: Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (329 aa)
panDL-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (116 aa)
pckAATP-dependent phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (533 aa)
AFL81041.1Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme. (382 aa)
AFL81050.1PFAM: Uroporphyrinogen-III synthase HemD. (249 aa)
AFL81111.1Deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific); PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: cryptochrome, DASH family. (434 aa)
AFL81112.1PFAM: Deoxyribodipyrimidine photo-lyase-related protein. (511 aa)
Your Current Organism:
Aequorivita sublithincola
NCBI taxonomy Id: 746697
Other names: A. sublithincola DSM 14238, Aequorivita sublithincola 9-3, Aequorivita sublithincola DSM 14238, Aequorivita sublithincola str. DSM 14238, Aequorivita sublithincola strain DSM 14238
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