STRINGSTRING
RIR_0025400 RIR_0025400 RIR_0090000 RIR_0090000 RIR_0090900 RIR_0090900 RIR_0100100 RIR_0100100 RIR_0098100 RIR_0098100 RIR_0163700 RIR_0163700 RIR_0173400 RIR_0173400 RIR_0176600 RIR_0176600 RIR_0257800 RIR_0257800 RIR_0293400 RIR_0293400 RIR_0357000 RIR_0357000 RIR_0359000 RIR_0359000 RIR_0381300 RIR_0381300 RIR_0381500 RIR_0381500 RIR_0420700 RIR_0420700 RIR_0428700 RIR_0428700 RIR_0491800 RIR_0491800 RIR_0527100 RIR_0527100 RIR_0598000 RIR_0598000 RIR_0616100 RIR_0616100 RIR_0711500 RIR_0711500 RIR_0716500 RIR_0716500 RIR_0758700 RIR_0758700 RIR_0822800 RIR_0822800 RIR_0822300 RIR_0822300 RIR_0825600 RIR_0825600 RIR_0846400 RIR_0846400 RIR_0852600 RIR_0852600 RIR_0859600 RIR_0859600 RIR_0977800 RIR_0977800 RIR_1020900 RIR_1020900 YTM1 YTM1 RIR_1036100 RIR_1036100 RIR_1039900 RIR_1039900 RIR_1061500 RIR_1061500 RIR_1084200 RIR_1084200 RIR_1117600 RIR_1117600 TIF6 TIF6 RIR_1175300 RIR_1175300 RIR_1176800 RIR_1176800 RIR_1243000 RIR_1243000 RIR_1245400 RIR_1245400 RIR_1262700 RIR_1262700 RIR_1262600 RIR_1262600 RIR_1264700 RIR_1264700 RIR_1266500 RIR_1266500 RIR_1265900 RIR_1265900 RIR_1270500 RIR_1270500 NAT10 NAT10 RIR_1271500 RIR_1271500 RIR_1280500 RIR_1280500 RIR_1290400 RIR_1290400 RIR_1291000 RIR_1291000 RIR_1292400 RIR_1292400 RIR_1405200 RIR_1405200 RIR_1413500 RIR_1413500 RIR_1416000 RIR_1416000 RIR_1424500 RIR_1424500 RIR_1466300 RIR_1466300 RIR_1568400 RIR_1568400 RIR_1589900 RIR_1589900 RIR_1614900 RIR_1614900 RIR_1820700 RIR_1820700 SPB1 SPB1 RIR_1928800 RIR_1928800 RIR_1930900 RIR_1930900 RIR_1945100 RIR_1945100 RIR_1956800 RIR_1956800 RIR_1964200 RIR_1964200 RIR_1982900 RIR_1982900 RIR_2034100 RIR_2034100 RIR_2043600 RIR_2043600 RIR_2148100 RIR_2148100 RIR_2190600 RIR_2190600 RIR_2363000 RIR_2363000 RIR_2375900 RIR_2375900 RIR_2374600 RIR_2374600 RIR_2451400 RIR_2451400 RIR_2497700 RIR_2497700 RIR_2498000 RIR_2498000 RIR_2514400 RIR_2514400 RIR_2514600 RIR_2514600 RIR_2548600 RIR_2548600 RIR_2584400 RIR_2584400 RIR_2640500 RIR_2640500 RIR_2658600 RIR_2658600 RIR_2659700 RIR_2659700 RIR_2673500 RIR_2673500 RIR_2818800 RIR_2818800 RIR_2841700 RIR_2841700 RIR_2843100 RIR_2843100 RIR_2843600 RIR_2843600 RIR_2882400 RIR_2882400 RIR_2964300 RIR_2964300 RIR_2974700 RIR_2974700 RIR_3032600 RIR_3032600 RIR_3061900 RIR_3061900 RIR_3086100 RIR_3086100 RIR_3090800 RIR_3090800 RIR_3111700 RIR_3111700 RIR_3100200 RIR_3100200 RIR_3114600 RIR_3114600 RIR_3231400 RIR_3231400 RIR_3240600 RIR_3240600 RIR_3241300 RIR_3241300 RIR_3260300 RIR_3260300 RIR_3261700 RIR_3261700 RIR_3267200 RIR_3267200 RIR_3267000 RIR_3267000 ERB1 ERB1 RIR_3319100 RIR_3319100 RIR_3362100 RIR_3362100 RIR_3374700 RIR_3374700 RIR_3425310 RIR_3425310 RIR_3442000 RIR_3442000 RIR_3458400 RIR_3458400 RIR_3488300 RIR_3488300 RIR_3494700 RIR_3494700 RIR_3496200 RIR_3496200 RIR_3529200 RIR_3529200 RIR_2433800 RIR_2433800 RIR_0190100 RIR_0190100 RIR_1565500 RIR_1565500 RIR_2433900 RIR_2433900 RIR_0892500 RIR_0892500 RIR_2841400 RIR_2841400 RIR_1163510 RIR_1163510 RIR_0421200 RIR_0421200 RIR_2558900 RIR_2558900 RIR_3086500 RIR_3086500 RIR_0206500 RIR_0206500 RIR_1271300 RIR_1271300 RIR_1100800 RIR_1100800 RIR_0356500 RIR_0356500 RIR_3319400 RIR_3319400 RIR_0091700 RIR_0091700 RIR_1595500 RIR_1595500 RIR_0084400 RIR_0084400 RIR_2716500 RIR_2716500 RIR_1611810 RIR_1611810 RIR_1023800 RIR_1023800 RIR_3090700 RIR_3090700 RIR_2959100 RIR_2959100 RIR_3093700 RIR_3093700 RIR_1974100 RIR_1974100 RIR_0500300 RIR_0500300 RIR_3455900 RIR_3455900 RIR_0832300 RIR_0832300 RIR_3318900 RIR_3318900 GLOIN_2v632066 GLOIN_2v632066 RIR_2362700 RIR_2362700 RIR_2593000 RIR_2593000 RIR_2656900 RIR_2656900 RIR_0854900 RIR_0854900 RIR_1373700 RIR_1373700 NOP7 NOP7 RIR_1034800 RIR_1034800
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RIR_0025400tRNA (Cytosine34-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (697 aa)
RIR_0090000Notchless protein homolog. (490 aa)
RIR_0090900Enolase-phosphatase E1. (264 aa)
RIR_0100100U3 small nucleolar RNA-associated protein 20. (2805 aa)
RIR_0098100Large subunit GTPase 1. (548 aa)
RIR_0163700Cell growth-regulating nucleolar protein. (413 aa)
RIR_0173400Periodic tryptophan protein 1. (509 aa)
RIR_0176600Protein kinase tyrosine protein phosphatase. (679 aa)
RIR_0257800Putative Ribosome assembly protein RRB1. (802 aa)
RIR_0293400Nucleolar protein 14. (913 aa)
RIR_0357000U3 small nucleolar RNA-associated protein 19. (619 aa)
RIR_0359000U3 small nucleolar RNA-associated protein 15. (523 aa)
RIR_0381300Crinkler family protein. (197 aa)
RIR_0381500Crinkler family protein, putative. (249 aa)
RIR_0420700S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (338 aa)
RIR_0428700U3 small nucleolar RNA-associated protein 12. (935 aa)
RIR_0491800Nucleolar protein, component of the small subunit processome Utp14p. (968 aa)
RIR_0527100Crinkler family protein, putative. (760 aa)
RIR_0598000Nucleolar complex protein 2. (650 aa)
RIR_0616100rRNA biogenesis protein RRP5. (1564 aa)
RIR_0711500Ribosome biogenesis protein BMS1. (1150 aa)
RIR_0716500Ribosome biogenesis protein MAK21. (801 aa)
RIR_0758700U3 small nucleolar ribonucleoprotein protein IMP4. (282 aa)
RIR_0822800U3 small nucleolar RNA-associated protein 5. (767 aa)
RIR_0822300U3 small nucleolar RNA-associated protein 18. (605 aa)
RIR_0825600Pre-rRNA-processing protein esf1. (628 aa)
RIR_0846400RNA helicase. (754 aa)
RIR_0852600ATP-dependent RNA helicase DOB1. (1005 aa)
RIR_0859600U3 small nucleolar ribonucleoprotein protein LCP5. (397 aa)
RIR_0977800Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (448 aa)
RIR_1020900Uncharacterized protein. (130 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (446 aa)
RIR_1036100Mis18-binding protein 1. (597 aa)
RIR_1039900Ribosome assembly protein rsa3. (215 aa)
RIR_1061500Nucleolar protein. (681 aa)
RIR_1084200KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (331 aa)
RIR_1117600RNA binding domain-containing protein. (876 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (234 aa)
RIR_1175300Nucleolar protein 12. (483 aa)
RIR_1176800Nucleolar protein 15. (238 aa)
RIR_1243000P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family. (475 aa)
RIR_1245400Uncharacterized protein. (1332 aa)
RIR_1262700Nucleolar protein 4. (339 aa)
RIR_1262600Nucleolar protein 4. (430 aa)
RIR_1264700ATP-dependent RNA helicase DHX37/DHR1. (1128 aa)
RIR_1266500Nonsense-mediated mRNA decay protein 3. (785 aa)
RIR_1265900RNA 3'-terminal phosphate cyclase (ATP). (355 aa)
RIR_1270500Putative Pre-60S factor REI1. (387 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (734 aa)
RIR_1271500N-acetyltransferase 10. (273 aa)
RIR_1280500mRNA turnover protein 4. (227 aa)
RIR_1290400Ribosome biogenesis protein rrp14-n. (528 aa)
RIR_1291000Exosome complex exonuclease RRP43. (292 aa)
RIR_1292400P-loop containing nucleoside triphosphate hydrolase protein. (832 aa)
RIR_1405200Pre-mRNA-splicing factor cwc22 homolog. (195 aa)
RIR_1413500Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5455 aa)
RIR_1416000Quinon protein alcohol dehydrogenase-like superfamily. (954 aa)
RIR_1424500Dead-box ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family. (615 aa)
RIR_1466300ATP-dependent RNA helicase DDX60. (1882 aa)
RIR_1568400Ribosome biogenesis protein, G-pathc domain, PINX1 family (Predicted). (400 aa)
RIR_1589900Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (769 aa)
RIR_1614900Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (488 aa)
RIR_1820700U3 small nucleolar RNA-associated protein 3. (1294 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (845 aa)
RIR_1928800rRNA-processing protein 12. (1386 aa)
RIR_1930900U3 small nucleolar RNA-associated protein MPP10. (1251 aa)
RIR_1945100ATP-dependent RNA helicase DDX56/DBP9. (597 aa)
RIR_1956800U3 small nucleolar RNA-associated protein 6. (681 aa)
RIR_1964200ATP-dependent RNA helicase DOB1. (1173 aa)
RIR_1982900Protein MAK11. (374 aa)
RIR_2034100Nuclear GTP-binding protein. (474 aa)
RIR_2043600U3 small nucleolar RNA-associated protein 23. (284 aa)
RIR_2148100Calcium binding protein caleosin. (347 aa)
RIR_2190600Exosome complex component RRP40. (243 aa)
RIR_2363000WD repeat and SOF domain-containing protein 1. (411 aa)
RIR_2375900GTP-binding protein. (607 aa)
RIR_2374600Ribosome production factor 1. (296 aa)
RIR_2451400U3 small nucleolar RNA-associated protein 4. (756 aa)
RIR_2497700Ribosome biogenesis protein urb1. (2146 aa)
RIR_2498000Osmoregulation-related protein. (839 aa)
RIR_2514400ATP-dependent RNA helicase DBP3; Belongs to the DEAD box helicase family. (541 aa)
RIR_2514600Srp40p. (454 aa)
RIR_2548600RNA helicase. (1024 aa)
RIR_2584400RNA helicase. (615 aa)
RIR_2640500Ribosome biogenesis protein NSA2. (260 aa)
RIR_2658600Curved DNA-binding protein cdb4, peptidase family. (404 aa)
RIR_2659700Ribosomal RNA methyltransferase Nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (411 aa)
RIR_2673500Pre-rRNA processing protein associated with U3 snRNP. (506 aa)
RIR_2818800Puf family RNA-binding protein Puf6 (Predicted). (834 aa)
RIR_2841700ATP-dependent RNA helicase DDX52/ROK1; Belongs to the DEAD box helicase family. (592 aa)
RIR_284310060S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
RIR_2843600ATP-dependent RNA helicase MSS116. (630 aa)
RIR_2882400Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (722 aa)
RIR_2964300DNA-directed DNA polymerase. (1197 aa)
RIR_2974700RNA helicase. (660 aa)
RIR_3032600Periodic tryptophan protein 2-like protein. (123 aa)
RIR_3061900Protein required for cell viability rrp17. (208 aa)
RIR_3086100Conserved fungal protein. (122 aa)
RIR_3090800Ribosome biogenesis protein RLP24. (102 aa)
RIR_3111700Exosome complex exonuclease RRP44-like protein; Belongs to the RNR ribonuclease family. (1002 aa)
RIR_3100200ATP-dependent RNA helicase RRP3; Belongs to the DEAD box helicase family. (327 aa)
RIR_3114600Ribosome biogenesis protein ENP2. (646 aa)
RIR_3231400Uncharacterized protein. (185 aa)
RIR_32406003'-to-5' phosphorolytic exoribonuclease. (243 aa)
RIR_3241300Protein faf1. (209 aa)
RIR_3260300Dual specificity phosphatase. (143 aa)
RIR_3261700Ribosomal subunit biogenesis RNA-binding protein. (289 aa)
RIR_3267200RNA-3'-phosphate cyclase protein. (310 aa)
RIR_3267000Chromatin modification-related protein; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the ING family. (975 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (777 aa)
RIR_3319100Ribosomal large subunit assembly and maintenance-related protein. (396 aa)
RIR_3362100DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1401 aa)
RIR_3374700Nucleolin. (514 aa)
RIR_3425310ATP-dependent RNA helicase DDX27. (909 aa)
RIR_3442000Exosome complex component RRP4. (311 aa)
RIR_3458400Periodic tryptophan protein 2. (853 aa)
RIR_3488300rRNA processing protein rrp15. (229 aa)
RIR_3494700Putative methyltransferase nsun6 isoform x2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (425 aa)
RIR_3496200U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (762 aa)
RIR_3529200Nucleolus protein required for cell viability. (336 aa)
RIR_2433800rRNA 2'-O-methyltransferase fibrillarin. (315 aa)
RIR_0190100rRNA processing protein Fcf1 (Predicted). (195 aa)
RIR_1565500U3 small nucleolar RNA-associated protein 22. (1418 aa)
RIR_2433900rRNA-processing protein 7. (385 aa)
RIR_0892500Crinkler family protein, putative. (652 aa)
RIR_2841400Putative RNA exonuclease 4. (288 aa)
RIR_1163510Traub family protein. (528 aa)
RIR_0421200Ribosomal protein S5 domain 2-type protein. (263 aa)
RIR_2558900Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (283 aa)
RIR_3086500Nuclear DNA helicase II. (1549 aa)
RIR_0206500U3 small nucleolar ribonucleoprotein protein IMP3. (182 aa)
RIR_1271300Protein MAK16; Belongs to the MAK16 family. (309 aa)
RIR_1100800Nucleolar protein 56. (638 aa)
RIR_0356500Ribosomal RNA-processing protein 36. (251 aa)
RIR_3319400Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (642 aa)
RIR_0091700Ribosome biogenesis protein NSA1. (378 aa)
RIR_1595500Ribosomal protein S5 domain 2-type protein. (277 aa)
RIR_0084400Putative U3 small nucleolar RNA-associated protein. (528 aa)
RIR_2716500RNA-binding protein involved in ribosomal large subunit assembly and maintenance (Predicted). (425 aa)
RIR_1611810Tis13_96408. (114 aa)
RIR_1023800U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (264 aa)
RIR_3090700Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
RIR_2959100ATP-dependent RNA helicase DBP10. (858 aa)
RIR_3093700Cut3 interacting protein Cti1, predicted exosome subunit. (226 aa)
RIR_1974100Exosome complex component CSL4. (189 aa)
RIR_0500300Utp21 specific WD40 associated putative domain-containing protein. (898 aa)
RIR_3455900Exosome RNAse PH-like protein. (224 aa)
RIR_0832300P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family. (679 aa)
RIR_3318900ESF2/ABP1 family protein. (281 aa)
GLOIN_2v632066Ribosome biogenesis protein Nop16. (203 aa)
RIR_2362700M-phase phosphoprotein 6. (182 aa)
RIR_2593000Ribosome biogenesis protein UTP30. (637 aa)
RIR_2656900U3 small nucleolar RNA-associated protein 13. (812 aa)
RIR_0854900Alpha/beta knot methyltransferase. (326 aa)
RIR_1373700Importin-7. (1049 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (678 aa)
RIR_1034800Ribosomal protein S5 domain 2-type protein. (312 aa)
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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