STRINGSTRING
RIR_1808900 RIR_1808900 RIR_3505200 RIR_3505200 RIR_1346600 RIR_1346600 RIR_1063600 RIR_1063600 RIR_0872400 RIR_0872400 RIR_0677800 RIR_0677800 RIR_0301200 RIR_0301200 RIR_1693800 RIR_1693800 RIR_2450600 RIR_2450600 RIR_3505500 RIR_3505500 URM1 URM1 RIR_1595000 RIR_1595000 RIR_1721400 RIR_1721400 RIR_2843300 RIR_2843300 RIR_2758500 RIR_2758500 RIR_2536600 RIR_2536600 RIR_2389500 RIR_2389500 RIR_2315400 RIR_2315400 RIR_2314700 RIR_2314700 RIR_2186600 RIR_2186600 RIR_3090600 RIR_3090600 RIR_3444400 RIR_3444400 RIR_1346520 RIR_1346520
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RIR_1808900Ubiquitin-related domain-containing protein. (305 aa)
RIR_3505200Ubiquitin domain-containing protein. (402 aa)
RIR_1346600Ubiquitin-like protein smt3. (207 aa)
RIR_1063600Ubiquitin C. (381 aa)
RIR_0872400Small ubiquitin-related modifier. (103 aa)
RIR_0677800Ubiquitin-ribosomal 40S subunit protein S31 fusion protein. (164 aa)
RIR_0301200Ubiquitin domain-containing protein. (317 aa)
RIR_1693800Ubiquitin-like protein. (72 aa)
RIR_2450600RNA polymerase I specific transcription initiation factor rrn7. (694 aa)
RIR_3505500Small ubiquitin-related modifier. (98 aa)
URM1Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by the MOCS3 homolog UBA4. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target pr [...] (103 aa)
RIR_1595000Ubiquitin-related domain-containing protein. (100 aa)
RIR_1721400Ubiquitin domain-containing protein. (318 aa)
RIR_2843300Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (140 aa)
RIR_2758500Ubiquitin domain-containing protein. (329 aa)
RIR_2536600Serine/threonine protein kinase. (761 aa)
RIR_2389500Ubiquitin C. (168 aa)
RIR_2315400Ubiquitin domain-containing protein. (323 aa)
RIR_2314700Ubiquitin domain-containing protein. (327 aa)
RIR_2186600Ubiquitin-ribosomal 60S subunit protein l40 fusion protein. (525 aa)
RIR_3090600Ubiquitin-like protein Nedd8. (77 aa)
RIR_3444400Ubiquitin 1, putative. (374 aa)
RIR_1346520Ubiquitin-related domain-containing protein. (104 aa)
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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