STRINGSTRING
RIR_0689400 RIR_0689400 RIR_0090200 RIR_0090200 RIR_0186900 RIR_0186900 RIR_0487000 RIR_0487000 RIR_0559700 RIR_0559700 RIR_0669600 RIR_0669600 RIR_0989900 RIR_0989900 RIR_0997600 RIR_0997600 RIR_1056700 RIR_1056700 RIR_1569300 RIR_1569300 RIR_1729500 RIR_1729500 RIR_1808400 RIR_1808400 RIR_1989000 RIR_1989000 RIR_2225700 RIR_2225700 RIR_2346600 RIR_2346600 RIR_2518800 RIR_2518800 RIR_2518700 RIR_2518700 RIR_2570200 RIR_2570200 RIR_0746600 RIR_0746600 RIR_2874000 RIR_2874000 RIR_2879500 RIR_2879500 RIR_2881310 RIR_2881310 RIR_2891400 RIR_2891400 RIR_3169700 RIR_3169700 RIR_3192900 RIR_3192900 RIR_3266700 RIR_3266700 RIR_3445800 RIR_3445800 RIR_3455800 RIR_3455800 RIR_3450500 RIR_3450500 RIR_3487700 RIR_3487700 RIR_1265000 RIR_1265000 RIR_2562800 RIR_2562800 SUS1 SUS1 RIR_3479900 RIR_3479900 RIR_0493900 RIR_0493900 RIR_0190400 RIR_0190400 RIR_2596500 RIR_2596500 RIR_2970300 RIR_2970300 RIR_1808800 RIR_1808800 RIR_3350300 RIR_3350300
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RIR_0689400Mortality factor 4-like protein 1. (281 aa)
RIR_0090200Saga complex subunit spt20. (859 aa)
RIR_0186900Bzip transcription factor. (528 aa)
RIR_0487000Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (121 aa)
RIR_0559700Homeodomain-like DNA binding domain-containing transcription factor. (237 aa)
RIR_0669600Phd zinc finger-containing putative transcriptional regulator. (1383 aa)
RIR_0989900Transcription initiation factor IID, 18kD subunit-domain-containing protein. (308 aa)
RIR_0997600Mortality factor 4-like protein 1. (262 aa)
RIR_1056700Vacuolar protein sorting-associated protein 72. (400 aa)
RIR_1569300SAGA-associated factor 29. (290 aa)
RIR_1729500Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family. (1314 aa)
RIR_1808400Cysteine-rich protein 2-binding protein-like. (449 aa)
RIR_1989000Transcription factor, atf-creb family. (496 aa)
RIR_2225700Uncharacterized protein. (154 aa)
RIR_2346600Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (123 aa)
RIR_2518800Uncharacterized protein. (120 aa)
RIR_2518700Homeodomain-like DNA binding domain-containing transcription factor. (69 aa)
RIR_2570200Elongator complex protein 2. (881 aa)
RIR_0746600Homeodomain-like DNA binding domain-containing transcription factor. (223 aa)
RIR_2874000Elongator complex protein 5. (355 aa)
RIR_2879500Histone H2B; Belongs to the histone H2B family. (175 aa)
RIR_2881310Histone H2B; Belongs to the histone H2B family. (171 aa)
RIR_2891400Homeodomain-like DNA binding domain-containing transcription factor. (237 aa)
RIR_3169700Uncharacterized protein. (82 aa)
RIR_3192900Homeodomain-like DNA binding domain-containing transcription factor. (284 aa)
RIR_3266700SAGA-associated factor 11. (313 aa)
RIR_3445800Mrg family clr6 histone deacetylase complex subunit alp13. (469 aa)
RIR_3455800Elongator complex subunit Elp4 (Predicted). (421 aa)
RIR_3450500Homeodomain-like DNA binding domain-containing transcription factor. (210 aa)
RIR_3487700Bromodomain containing protein 1, bdc1. (764 aa)
RIR_1265000Mortality factor 4-like protein 1. (336 aa)
RIR_2562800SWR1-complex protein 4. (476 aa)
SUS1Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] (105 aa)
RIR_3479900RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (473 aa)
RIR_0493900Class 2 transcription repressor nc2 beta subunit. (148 aa)
RIR_0190400Map3k12-binding inhibitory protein 1 isoform x2. (572 aa)
RIR_2596500Histone acetyltransferase type B catalytic subunit; Catalytic component of the histone acetylase B (HAT-B) complex. Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. Involved in DNA double-strand break repair; Belongs to the HAT1 family. (415 aa)
RIR_2970300Elongator complex protein 6. (294 aa)
RIR_1808800Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
RIR_3350300Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. (548 aa)
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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