STRINGSTRING
RIR_2563300 RIR_2563300 RIR_2536600 RIR_2536600 RIR_2470500 RIR_2470500 RIR_2389500 RIR_2389500 RIR_2346600 RIR_2346600 RIR_2315400 RIR_2315400 RIR_2314700 RIR_2314700 RIR_2045900 RIR_2045900 RIR_1808900 RIR_1808900 RIR_1700400 RIR_1700400 RIR_1285500 RIR_1285500 RIR_1063600 RIR_1063600 RIR_0677800 RIR_0677800 RIR_0835600 RIR_0835600 RIR_0533600 RIR_0533600 RIR_0487000 RIR_0487000 RIR_0301200 RIR_0301200 RIR_0163500 RIR_0163500 RIR_0066700 RIR_0066700 RIR_3505500 RIR_3505500 RIR_0185400 RIR_0185400 RIR_3505200 RIR_3505200 RIR_3444400 RIR_3444400 RIR_3535800 RIR_3535800 RIR_3535810 RIR_3535810 RIR_1721400 RIR_1721400 RIR_1969100 RIR_1969100 RIR_2506300 RIR_2506300 RIR_2881310 RIR_2881310 RIR_2879500 RIR_2879500 RIR_2973900 RIR_2973900 RIR_2758500 RIR_2758500
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RIR_2563300RAD50-like DNA repair protein. (1273 aa)
RIR_2536600Serine/threonine protein kinase. (761 aa)
RIR_2470500Ubiquitin-conjugating enzyme E2 D; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
RIR_2389500Ubiquitin C. (168 aa)
RIR_2346600Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (123 aa)
RIR_2315400Ubiquitin domain-containing protein. (323 aa)
RIR_2314700Ubiquitin domain-containing protein. (327 aa)
RIR_2045900Cell cycle arrest in response to pheromone-related protein. (548 aa)
RIR_1808900Ubiquitin-related domain-containing protein. (305 aa)
RIR_1700400RNA-directed DNA polymerase from mobile element jockey-like, partial. (532 aa)
RIR_1285500Serine/threonine-protein kinase Chk2; Belongs to the protein kinase superfamily. (480 aa)
RIR_1063600Ubiquitin C. (381 aa)
RIR_0677800Ubiquitin-ribosomal 40S subunit protein S31 fusion protein. (164 aa)
RIR_0835600SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5. (1067 aa)
RIR_0533600Cell cycle arrest in response to pheromone-related protein. (635 aa)
RIR_0487000Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (121 aa)
RIR_0301200Ubiquitin domain-containing protein. (317 aa)
RIR_0163500Kxdl motif-containing protein 1 isoform x1. (125 aa)
RIR_0066700Reverse transcriptase. (525 aa)
RIR_3505500Small ubiquitin-related modifier. (98 aa)
RIR_0185400Zf-c2h2 type zinc finger protein/uba domain protein. (317 aa)
RIR_3505200Ubiquitin domain-containing protein. (402 aa)
RIR_3444400Ubiquitin 1, putative. (374 aa)
RIR_3535800Uncharacterized protein. (88 aa)
RIR_3535810JEMT01027768.1_cds_EXX56255.1_23736: PROVISIONAL. (77 aa)
RIR_1721400Ubiquitin domain-containing protein. (318 aa)
RIR_1969100Metallo-dependent phosphatase-like protein. (869 aa)
RIR_2506300Ubiquitin-conjugating protein dma1. (460 aa)
RIR_2881310Histone H2B; Belongs to the histone H2B family. (171 aa)
RIR_2879500Histone H2B; Belongs to the histone H2B family. (175 aa)
RIR_2973900Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (411 aa)
RIR_2758500Ubiquitin domain-containing protein. (329 aa)
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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