(6 nodes) Mixed, incl. Ribosomal protein L10, and rRNA (cytosine) methyltransferase activity network (Heterobasidion irregulare)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W4K7B8_9AGAM	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (253 aa)
	W4KAL7_9AGAM	Uncharacterized protein. (363 aa)
	W4KDA0_9AGAM	RRM domain-containing protein. (259 aa)
	W4KKA6_9AGAM	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (499 aa)
	W4KNH3_9AGAM	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	W4KP83_9AGAM	RNA helicase. (548 aa)

Your Current Organism:

Heterobasidion irregulare

NCBI taxonomy Id: 747525
Other names: H. irregulare TC 32-1, Heterobasidion irregulare TC 32-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4K7B8_9AGAM	W4KAL7_9AGAM	W4K7B8	W4KAL7	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized protein.	0.995
W4K7B8_9AGAM	W4KDA0_9AGAM	W4K7B8	W4KDA0	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	RRM domain-containing protein.	0.995
W4K7B8_9AGAM	W4KKA6_9AGAM	W4K7B8	W4KKA6	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.997
W4K7B8_9AGAM	W4KNH3_9AGAM	W4K7B8	W4KNH3	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.992
W4K7B8_9AGAM	W4KP83_9AGAM	W4K7B8	W4KP83	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	RNA helicase.	0.996
W4KAL7_9AGAM	W4K7B8_9AGAM	W4KAL7	W4K7B8	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.995
W4KAL7_9AGAM	W4KDA0_9AGAM	W4KAL7	W4KDA0	Uncharacterized protein.	RRM domain-containing protein.	0.999
W4KAL7_9AGAM	W4KKA6_9AGAM	W4KAL7	W4KKA6	Uncharacterized protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.994
W4KAL7_9AGAM	W4KNH3_9AGAM	W4KAL7	W4KNH3	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.990
W4KAL7_9AGAM	W4KP83_9AGAM	W4KAL7	W4KP83	Uncharacterized protein.	RNA helicase.	0.999
W4KDA0_9AGAM	W4K7B8_9AGAM	W4KDA0	W4K7B8	RRM domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.995
W4KDA0_9AGAM	W4KAL7_9AGAM	W4KDA0	W4KAL7	RRM domain-containing protein.	Uncharacterized protein.	0.999
W4KDA0_9AGAM	W4KKA6_9AGAM	W4KDA0	W4KKA6	RRM domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.997
W4KDA0_9AGAM	W4KNH3_9AGAM	W4KDA0	W4KNH3	RRM domain-containing protein.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.997
W4KDA0_9AGAM	W4KP83_9AGAM	W4KDA0	W4KP83	RRM domain-containing protein.	RNA helicase.	0.998
W4KKA6_9AGAM	W4K7B8_9AGAM	W4KKA6	W4K7B8	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.997
W4KKA6_9AGAM	W4KAL7_9AGAM	W4KKA6	W4KAL7	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.994
W4KKA6_9AGAM	W4KDA0_9AGAM	W4KKA6	W4KDA0	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	RRM domain-containing protein.	0.997
W4KKA6_9AGAM	W4KNH3_9AGAM	W4KKA6	W4KNH3	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.998
W4KKA6_9AGAM	W4KP83_9AGAM	W4KKA6	W4KP83	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	RNA helicase.	0.996