27 items (Heterobasidion irregulare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W4JPL4_9AGAM	Uncharacterized protein. (681 aa)
	W4JQN5_9AGAM	Uncharacterized protein. (488 aa)
	W4JSG1_9AGAM	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (347 aa)
	W4JTC6_9AGAM	Uncharacterized protein. (212 aa)
	W4JTI3_9AGAM	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (797 aa)
	W4JWJ8_9AGAM	Nup54 domain-containing protein. (577 aa)
	W4JWS1_9AGAM	ELYS domain-containing protein. (247 aa)
	W4JWV6_9AGAM	Nup96 domain-containing protein. (893 aa)
	W4JYR1_9AGAM	Uncharacterized protein. (237 aa)
	W4JYT2_9AGAM	Uncharacterized protein. (329 aa)
	W4JZ59_9AGAM	Nuclear pore protein. (864 aa)
	W4K1W8_9AGAM	Uncharacterized protein. (2109 aa)
	W4K2L2_9AGAM	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (714 aa)
	W4KAI9_9AGAM	WD_REPEATS_REGION domain-containing protein. (353 aa)
	W4KAZ5_9AGAM	Uncharacterized protein. (590 aa)
	W4KC10_9AGAM	Uncharacterized protein. (453 aa)
	W4KC32_9AGAM	Uncharacterized protein. (1823 aa)
	W4KD71_9AGAM	Uncharacterized protein. (1986 aa)
	W4KDB4_9AGAM	Uncharacterized protein; Belongs to the DEAD box helicase family. (482 aa)
	W4KEM9_9AGAM	Nucleoporin, serine protease S59. (131 aa)
	W4KG29_9AGAM	Uncharacterized protein. (1089 aa)
	W4KHL3_9AGAM	Nuclear porin. (535 aa)
	W4KJJ1_9AGAM	Uncharacterized protein. (1153 aa)
	W4KKA1_9AGAM	Uncharacterized protein. (388 aa)
	W4KNL8_9AGAM	Uncharacterized protein. (1368 aa)
	W4KNR3_9AGAM	NTF2 domain-containing protein. (155 aa)
	W4KPX8_9AGAM	Uncharacterized protein. (1370 aa)

Your Current Organism:

Heterobasidion irregulare

NCBI taxonomy Id: 747525
Other names: H. irregulare TC 32-1, Heterobasidion irregulare TC 32-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4JPL4_9AGAM	W4JQN5_9AGAM	W4JPL4	W4JQN5	Uncharacterized protein.	Uncharacterized protein.	0.556
W4JPL4_9AGAM	W4JSG1_9AGAM	W4JPL4	W4JSG1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.965
W4JPL4_9AGAM	W4JTC6_9AGAM	W4JPL4	W4JTC6	Uncharacterized protein.	Uncharacterized protein.	0.658
W4JPL4_9AGAM	W4JTI3_9AGAM	W4JPL4	W4JTI3	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.907
W4JPL4_9AGAM	W4JWJ8_9AGAM	W4JPL4	W4JWJ8	Uncharacterized protein.	Nup54 domain-containing protein.	0.924
W4JPL4_9AGAM	W4JWS1_9AGAM	W4JPL4	W4JWS1	Uncharacterized protein.	ELYS domain-containing protein.	0.747
W4JPL4_9AGAM	W4JWV6_9AGAM	W4JPL4	W4JWV6	Uncharacterized protein.	Nup96 domain-containing protein.	0.721
W4JPL4_9AGAM	W4JYR1_9AGAM	W4JPL4	W4JYR1	Uncharacterized protein.	Uncharacterized protein.	0.747
W4JPL4_9AGAM	W4JYT2_9AGAM	W4JPL4	W4JYT2	Uncharacterized protein.	Uncharacterized protein.	0.604
W4JPL4_9AGAM	W4JZ59_9AGAM	W4JPL4	W4JZ59	Uncharacterized protein.	Nuclear pore protein.	0.971
W4JPL4_9AGAM	W4K1W8_9AGAM	W4JPL4	W4K1W8	Uncharacterized protein.	Uncharacterized protein.	0.953
W4JPL4_9AGAM	W4K2L2_9AGAM	W4JPL4	W4K2L2	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.895
W4JPL4_9AGAM	W4KC10_9AGAM	W4JPL4	W4KC10	Uncharacterized protein.	Uncharacterized protein.	0.494
W4JPL4_9AGAM	W4KC32_9AGAM	W4JPL4	W4KC32	Uncharacterized protein.	Uncharacterized protein.	0.838
W4JPL4_9AGAM	W4KD71_9AGAM	W4JPL4	W4KD71	Uncharacterized protein.	Uncharacterized protein.	0.936
W4JPL4_9AGAM	W4KEM9_9AGAM	W4JPL4	W4KEM9	Uncharacterized protein.	Nucleoporin, serine protease S59.	0.721
W4JPL4_9AGAM	W4KG29_9AGAM	W4JPL4	W4KG29	Uncharacterized protein.	Uncharacterized protein.	0.721
W4JPL4_9AGAM	W4KHL3_9AGAM	W4JPL4	W4KHL3	Uncharacterized protein.	Nuclear porin.	0.858
W4JPL4_9AGAM	W4KJJ1_9AGAM	W4JPL4	W4KJJ1	Uncharacterized protein.	Uncharacterized protein.	0.845
W4JPL4_9AGAM	W4KKA1_9AGAM	W4JPL4	W4KKA1	Uncharacterized protein.	Uncharacterized protein.	0.604