44 items (Heterobasidion irregulare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W4K3P2_9AGAM	ABC transporter. (1077 aa)
	W4K2V6_9AGAM	Uncharacterized protein. (119 aa)
	W4K2L2_9AGAM	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (714 aa)
	W4K219_9AGAM	TPR_MLP1_2 domain-containing protein. (145 aa)
	W4K1H3_9AGAM	RPOL4c domain-containing protein. (134 aa)
	W4JY87_9AGAM	Uncharacterized protein. (550 aa)
	W4JY71_9AGAM	Uncharacterized protein. (119 aa)
	W4JY35_9AGAM	TPR_MLP1_2 domain-containing protein. (145 aa)
	W4JY24_9AGAM	Uncharacterized protein. (160 aa)
	W4JXS3_9AGAM	Uncharacterized protein. (192 aa)
	W4JXA2_9AGAM	RRM domain-containing protein. (226 aa)
	W4JWQ2_9AGAM	RRM domain-containing protein. (93 aa)
	W4JW14_9AGAM	Uncharacterized protein. (177 aa)
	W4JV79_9AGAM	Uncharacterized protein. (112 aa)
	W4JTW8_9AGAM	Uncharacterized protein. (1465 aa)
	W4JTI3_9AGAM	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (797 aa)
	W4JQN5_9AGAM	Uncharacterized protein. (488 aa)
	SUS1	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] (99 aa)
	W4JNY1_9AGAM	Uncharacterized protein. (920 aa)
	W4JNG0_9AGAM	TPR_MLP1_2 domain-containing protein. (307 aa)
	W4JNF4_9AGAM	Uncharacterized protein. (127 aa)
	W4JN17_9AGAM	Uncharacterized protein. (276 aa)
	W4KNR3_9AGAM	NTF2 domain-containing protein. (155 aa)
	W4KLI4_9AGAM	Uncharacterized protein. (765 aa)
	W4KPP8_9AGAM	Uncharacterized protein. (438 aa)
	W4KPX8_9AGAM	Uncharacterized protein. (1370 aa)
	W4KK05_9AGAM	Uncharacterized protein. (547 aa)
	W4KGI1_9AGAM	Uncharacterized protein. (874 aa)
	W4KG96_9AGAM	PCI domain-containing protein. (398 aa)
	W4KF53_9AGAM	Uncharacterized protein. (206 aa)
	W4KF45_9AGAM	Uncharacterized protein. (2256 aa)
	W4KES5_9AGAM	Uncharacterized protein. (345 aa)
	W4KDK1_9AGAM	TFIIS N-terminal domain-containing protein. (915 aa)
	W4KDB4_9AGAM	Uncharacterized protein; Belongs to the DEAD box helicase family. (482 aa)
	W4KD19_9AGAM	Uncharacterized protein. (366 aa)
	W4KCQ4_9AGAM	Uncharacterized protein. (1099 aa)
	W4KBU5_9AGAM	Uncharacterized protein. (101 aa)
	W4KBA3_9AGAM	Uncharacterized protein. (582 aa)
	W4KAZ5_9AGAM	Uncharacterized protein. (590 aa)
	W4KAI9_9AGAM	WD_REPEATS_REGION domain-containing protein. (353 aa)
	W4K9P9_9AGAM	Uncharacterized protein. (146 aa)
	W4K9M4_9AGAM	Uncharacterized protein. (886 aa)
	W4K8E3_9AGAM	TPR_MLP1_2 domain-containing protein. (1856 aa)
	W4K804_9AGAM	FHA domain-containing protein. (313 aa)

Your Current Organism:

Heterobasidion irregulare

NCBI taxonomy Id: 747525
Other names: H. irregulare TC 32-1, Heterobasidion irregulare TC 32-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SUS1	W4JTW8_9AGAM	W4JSE2	W4JTW8	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]	Uncharacterized protein.	0.996
SUS1	W4JXA2_9AGAM	W4JSE2	W4JXA2	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]	RRM domain-containing protein.	0.525
SUS1	W4KAI9_9AGAM	W4JSE2	W4KAI9	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]	WD_REPEATS_REGION domain-containing protein.	0.519
SUS1	W4KAZ5_9AGAM	W4JSE2	W4KAZ5	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]	Uncharacterized protein.	0.714
SUS1	W4KBU5_9AGAM	W4JSE2	W4KBU5	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]	Uncharacterized protein.	0.706
SUS1	W4KES5_9AGAM	W4JSE2	W4KES5	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]	Uncharacterized protein.	0.754
SUS1	W4KG96_9AGAM	W4JSE2	W4KG96	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]	PCI domain-containing protein.	0.877
SUS1	W4KLI4_9AGAM	W4JSE2	W4KLI4	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]	Uncharacterized protein.	0.435
SUS1	W4KPP8_9AGAM	W4JSE2	W4KPP8	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]	Uncharacterized protein.	0.626
W4JN17_9AGAM	W4JQN5_9AGAM	W4JN17	W4JQN5	Uncharacterized protein.	Uncharacterized protein.	0.485
W4JN17_9AGAM	W4JTI3_9AGAM	W4JN17	W4JTI3	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.489
W4JN17_9AGAM	W4K2L2_9AGAM	W4JN17	W4K2L2	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.530
W4JN17_9AGAM	W4KAI9_9AGAM	W4JN17	W4KAI9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.607
W4JN17_9AGAM	W4KAZ5_9AGAM	W4JN17	W4KAZ5	Uncharacterized protein.	Uncharacterized protein.	0.846
W4JN17_9AGAM	W4KD19_9AGAM	W4JN17	W4KD19	Uncharacterized protein.	Uncharacterized protein.	0.650
W4JN17_9AGAM	W4KES5_9AGAM	W4JN17	W4KES5	Uncharacterized protein.	Uncharacterized protein.	0.665
W4JN17_9AGAM	W4KF53_9AGAM	W4JN17	W4KF53	Uncharacterized protein.	Uncharacterized protein.	0.674
W4JN17_9AGAM	W4KGI1_9AGAM	W4JN17	W4KGI1	Uncharacterized protein.	Uncharacterized protein.	0.766
W4JN17_9AGAM	W4KK05_9AGAM	W4JN17	W4KK05	Uncharacterized protein.	Uncharacterized protein.	0.466
W4JN17_9AGAM	W4KLI4_9AGAM	W4JN17	W4KLI4	Uncharacterized protein.	Uncharacterized protein.	0.659