20 items (Heterobasidion irregulare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W4KJK5_9AGAM	UEV domain-containing protein. (577 aa)
	W4JVG4_9AGAM	Metallo peptidase M67C. (694 aa)
	W4JVE7_9AGAM	F-box domain-containing protein. (453 aa)
	W4JV82_9AGAM	BRO1 domain-containing protein. (933 aa)
	W4JRM9_9AGAM	Uncharacterized protein. (253 aa)
	W4JRK3_9AGAM	Uncharacterized protein. (111 aa)
	W4JRC1_9AGAM	Uncharacterized protein. (253 aa)
	W4JP38_9AGAM	Uncharacterized protein. (551 aa)
	W4JYQ6_9AGAM	Uncharacterized protein. (192 aa)
	W4K020_9AGAM	Uncharacterized protein. (439 aa)
	W4K1S7_9AGAM	GLUE N-terminal domain-containing protein. (568 aa)
	W4K2Q1_9AGAM	RING-type domain-containing protein. (714 aa)
	W4K7F3_9AGAM	VPS37 C-terminal domain-containing protein. (184 aa)
	W4KF85_9AGAM	Uncharacterized protein. (216 aa)
	W4KFL9_9AGAM	Uncharacterized protein. (219 aa)
	W4KJU7_9AGAM	Uncharacterized protein. (249 aa)
	W4KLI6_9AGAM	USP domain-containing protein. (1430 aa)
	W4KPF6_9AGAM	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (213 aa)
	W4KPS9_9AGAM	Uncharacterized protein. (229 aa)
	W4KQP6_9AGAM	Uncharacterized protein. (207 aa)

Your Current Organism:

Heterobasidion irregulare

NCBI taxonomy Id: 747525
Other names: H. irregulare TC 32-1, Heterobasidion irregulare TC 32-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4JRC1_9AGAM	W4JRM9_9AGAM	W4JRC1	W4JRM9	Uncharacterized protein.	Uncharacterized protein.	0.900
W4JRC1_9AGAM	W4JYQ6_9AGAM	W4JRC1	W4JYQ6	Uncharacterized protein.	Uncharacterized protein.	0.951
W4JRC1_9AGAM	W4K020_9AGAM	W4JRC1	W4K020	Uncharacterized protein.	Uncharacterized protein.	0.601
W4JRC1_9AGAM	W4K1S7_9AGAM	W4JRC1	W4K1S7	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.941
W4JRC1_9AGAM	W4K7F3_9AGAM	W4JRC1	W4K7F3	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.767
W4JRC1_9AGAM	W4KF85_9AGAM	W4JRC1	W4KF85	Uncharacterized protein.	Uncharacterized protein.	0.714
W4JRC1_9AGAM	W4KFL9_9AGAM	W4JRC1	W4KFL9	Uncharacterized protein.	Uncharacterized protein.	0.810
W4JRC1_9AGAM	W4KJK5_9AGAM	W4JRC1	W4KJK5	Uncharacterized protein.	UEV domain-containing protein.	0.724
W4JRC1_9AGAM	W4KJU7_9AGAM	W4JRC1	W4KJU7	Uncharacterized protein.	Uncharacterized protein.	0.757
W4JRC1_9AGAM	W4KPF6_9AGAM	W4JRC1	W4KPF6	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.834
W4JRC1_9AGAM	W4KQP6_9AGAM	W4JRC1	W4KQP6	Uncharacterized protein.	Uncharacterized protein.	0.881
W4JRK3_9AGAM	W4JYQ6_9AGAM	W4JRK3	W4JYQ6	Uncharacterized protein.	Uncharacterized protein.	0.951
W4JRK3_9AGAM	W4K020_9AGAM	W4JRK3	W4K020	Uncharacterized protein.	Uncharacterized protein.	0.601
W4JRK3_9AGAM	W4K1S7_9AGAM	W4JRK3	W4K1S7	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.941
W4JRK3_9AGAM	W4K7F3_9AGAM	W4JRK3	W4K7F3	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.767
W4JRK3_9AGAM	W4KF85_9AGAM	W4JRK3	W4KF85	Uncharacterized protein.	Uncharacterized protein.	0.714
W4JRK3_9AGAM	W4KFL9_9AGAM	W4JRK3	W4KFL9	Uncharacterized protein.	Uncharacterized protein.	0.810
W4JRK3_9AGAM	W4KJK5_9AGAM	W4JRK3	W4KJK5	Uncharacterized protein.	UEV domain-containing protein.	0.724
W4JRK3_9AGAM	W4KJU7_9AGAM	W4JRK3	W4KJU7	Uncharacterized protein.	Uncharacterized protein.	0.757
W4JRK3_9AGAM	W4KPF6_9AGAM	W4JRK3	W4KPF6	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.834