(46 nodes) Catalytic step 2 spliceosome network (Heterobasidion irregulare)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W4JU07_9AGAM	Uncharacterized protein. (628 aa)
	W4KL71_9AGAM	Uncharacterized protein; Belongs to the DEAD box helicase family. (751 aa)
	W4KLJ2_9AGAM	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (155 aa)
	W4KLT1_9AGAM	PSP domain-containing protein. (481 aa)
	W4KLW3_9AGAM	Tr-type G domain-containing protein. (1517 aa)
	W4KMN6_9AGAM	Matrin-type domain-containing protein. (220 aa)
	W4KNI5_9AGAM	Uncharacterized protein. (519 aa)
	W4KPH2_9AGAM	WD_REPEATS_REGION domain-containing protein. (580 aa)
	W4KPM6_9AGAM	Uncharacterized protein. (551 aa)
	W4KQU6_9AGAM	Small nuclear ribonucleoprotein Sm D2. (111 aa)
	W4KR36_9AGAM	Uncharacterized protein. (1884 aa)
	W4KJL6_9AGAM	Uncharacterized protein. (754 aa)
	W4KJL4_9AGAM	RRM domain-containing protein. (150 aa)
	W4KIN2_9AGAM	Uncharacterized protein. (1203 aa)
	W4KHP3_9AGAM	MI domain-containing protein. (574 aa)
	W4KHI7_9AGAM	Small nuclear ribonucleoprotein G. (77 aa)
	W4KGZ6_9AGAM	Uncharacterized protein. (887 aa)
	W4KF72_9AGAM	RRM domain-containing protein. (123 aa)
	W4KF38_9AGAM	Uncharacterized protein. (591 aa)
	W4KES8_9AGAM	Sm domain-containing protein. (80 aa)
	W4KEN4_9AGAM	WD_REPEATS_REGION domain-containing protein. (368 aa)
	W4KEG6_9AGAM	Uncharacterized protein. (637 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	W4KD41_9AGAM	Uncharacterized protein; Belongs to the DEAD box helicase family. (396 aa)
	W4KC90_9AGAM	Uncharacterized protein. (365 aa)
	W4KB89_9AGAM	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (186 aa)
	W4K8X4_9AGAM	JAB_MPN domain-containing protein. (2313 aa)
	W4K8V2_9AGAM	Uncharacterized protein. (917 aa)
	W4K8Q1_9AGAM	Uncharacterized protein. (662 aa)
	W4K6A8_9AGAM	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	W4K5G9_9AGAM	WD_REPEATS_REGION domain-containing protein. (313 aa)
	W4K4C9_9AGAM	Sm domain-containing protein. (103 aa)
	W4K0B2_9AGAM	PPIase cyclophilin-type domain-containing protein. (469 aa)
	W4JZQ5_9AGAM	SF3b1 domain-containing protein. (1148 aa)
	W4JZE3_9AGAM	Sm domain-containing protein. (176 aa)
	W4JZ07_9AGAM	Uncharacterized protein. (1253 aa)
	W4JWS3_9AGAM	Uncharacterized protein. (347 aa)
	W4JUF1_9AGAM	WD_REPEATS_REGION domain-containing protein. (351 aa)
	W4JUC4_9AGAM	Uncharacterized protein. (752 aa)
	W4KL47_9AGAM	Uncharacterized protein. (199 aa)
	W4JTB6_9AGAM	Uncharacterized protein. (88 aa)
	W4JNT9_9AGAM	Pinin_SDK_memA domain-containing protein. (306 aa)
	W4KK40_9AGAM	Glutaredoxin-like protein; Belongs to the glutaredoxin family. (106 aa)
	W4KK23_9AGAM	CCHC-type domain-containing protein. (420 aa)
	W4KJP3_9AGAM	Uncharacterized protein. (319 aa)
	W4KKH5_9AGAM	Uncharacterized protein. (246 aa)

Your Current Organism:

Heterobasidion irregulare

NCBI taxonomy Id: 747525
Other names: H. irregulare TC 32-1, Heterobasidion irregulare TC 32-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	W4JUC4_9AGAM	W4KDA3	W4JUC4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.966
LSM3	W4JZE3_9AGAM	W4KDA3	W4JZE3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.994
LSM3	W4JZQ5_9AGAM	W4KDA3	W4JZQ5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	SF3b1 domain-containing protein.	0.854
LSM3	W4K4C9_9AGAM	W4KDA3	W4K4C9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM3	W4K6A8_9AGAM	W4KDA3	W4K6A8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	W4K8V2_9AGAM	W4KDA3	W4K8V2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.968
LSM3	W4K8X4_9AGAM	W4KDA3	W4K8X4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	JAB_MPN domain-containing protein.	0.994
LSM3	W4KD41_9AGAM	W4KDA3	W4KD41	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.425
LSM3	W4KEG6_9AGAM	W4KDA3	W4KEG6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.421
LSM3	W4KEN4_9AGAM	W4KDA3	W4KEN4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.421
LSM3	W4KES8_9AGAM	W4KDA3	W4KES8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.985
LSM3	W4KF38_9AGAM	W4KDA3	W4KF38	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.920
LSM3	W4KF72_9AGAM	W4KDA3	W4KF72	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RRM domain-containing protein.	0.671
LSM3	W4KHI7_9AGAM	W4KDA3	W4KHI7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.972
LSM3	W4KIN2_9AGAM	W4KDA3	W4KIN2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.404
LSM3	W4KJL6_9AGAM	W4KDA3	W4KJL6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.906
LSM3	W4KJP3_9AGAM	W4KDA3	W4KJP3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.442
LSM3	W4KL71_9AGAM	W4KDA3	W4KL71	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.603
LSM3	W4KLT1_9AGAM	W4KDA3	W4KLT1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PSP domain-containing protein.	0.929
LSM3	W4KLW3_9AGAM	W4KDA3	W4KLW3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Tr-type G domain-containing protein.	0.994