(23 nodes) Preribosome, large subunit precursor network (Heterobasidion irregulare)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W4KDA0_9AGAM	RRM domain-containing protein. (259 aa)
	W4JMW9_9AGAM	Uncharacterized protein; Belongs to the DEAD box helicase family. (792 aa)
	W4JUB6_9AGAM	CBF domain-containing protein. (527 aa)
	W4JZ68_9AGAM	Uncharacterized protein; Belongs to the DEAD box helicase family. (429 aa)
	W4JZH9_9AGAM	Ribosomal_L28e domain-containing protein. (361 aa)
	W4K222_9AGAM	C2H2-type domain-containing protein. (129 aa)
	W4K3T9_9AGAM	Uncharacterized protein. (689 aa)
	W4K4M4_9AGAM	ATP-dependent RNA helicase DBP10. (762 aa)
	W4K4P6_9AGAM	Uncharacterized protein. (269 aa)
	W4KA64_9AGAM	AAA ATPase. (792 aa)
	W4KCF3_9AGAM	Uncharacterized protein; Belongs to the DEAD box helicase family. (710 aa)
	W4KH30_9AGAM	Uncharacterized protein. (94 aa)
	W4KHV5_9AGAM	Rsa3 domain-containing protein. (205 aa)
	W4KIZ7_9AGAM	RNA helicase. (662 aa)
	W4KJ10_9AGAM	TRASH domain-containing protein. (172 aa)
	W4KJ38_9AGAM	Uncharacterized protein. (243 aa)
	W4KL09_9AGAM	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (817 aa)
	W4KL94_9AGAM	Uncharacterized protein. (502 aa)
	W4KM42_9AGAM	Brix domain-containing protein. (305 aa)
	W4KNH3_9AGAM	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (866 aa)
	W4KP83_9AGAM	RNA helicase. (548 aa)
	W4KQS3_9AGAM	Uncharacterized protein. (189 aa)

Your Current Organism:

Heterobasidion irregulare

NCBI taxonomy Id: 747525
Other names: H. irregulare TC 32-1, Heterobasidion irregulare TC 32-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPB1	W4JMW9_9AGAM	W4KNS6	W4JMW9	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.953
SPB1	W4JUB6_9AGAM	W4KNS6	W4JUB6	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	CBF domain-containing protein.	0.895
SPB1	W4JZ68_9AGAM	W4KNS6	W4JZ68	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.878
SPB1	W4JZH9_9AGAM	W4KNS6	W4JZH9	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Ribosomal_L28e domain-containing protein.	0.986
SPB1	W4K222_9AGAM	W4KNS6	W4K222	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	C2H2-type domain-containing protein.	0.454
SPB1	W4K3T9_9AGAM	W4KNS6	W4K3T9	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Uncharacterized protein.	0.995
SPB1	W4K4M4_9AGAM	W4KNS6	W4K4M4	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	ATP-dependent RNA helicase DBP10.	0.938
SPB1	W4K4P6_9AGAM	W4KNS6	W4K4P6	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Uncharacterized protein.	0.967
SPB1	W4KCF3_9AGAM	W4KNS6	W4KCF3	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.703
SPB1	W4KDA0_9AGAM	W4KNS6	W4KDA0	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	RRM domain-containing protein.	0.995
SPB1	W4KH30_9AGAM	W4KNS6	W4KH30	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Uncharacterized protein.	0.879
SPB1	W4KHV5_9AGAM	W4KNS6	W4KHV5	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Rsa3 domain-containing protein.	0.483
SPB1	W4KIZ7_9AGAM	W4KNS6	W4KIZ7	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	RNA helicase.	0.974
SPB1	W4KJ10_9AGAM	W4KNS6	W4KJ10	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	TRASH domain-containing protein.	0.992
SPB1	W4KJ38_9AGAM	W4KNS6	W4KJ38	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Uncharacterized protein.	0.971
SPB1	W4KL09_9AGAM	W4KNS6	W4KL09	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	0.984
SPB1	W4KL94_9AGAM	W4KNS6	W4KL94	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Uncharacterized protein.	0.860
SPB1	W4KM42_9AGAM	W4KNS6	W4KM42	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Brix domain-containing protein.	0.924
SPB1	W4KNH3_9AGAM	W4KNS6	W4KNH3	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.956
SPB1	W4KP83_9AGAM	W4KNS6	W4KP83	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	RNA helicase.	0.994