6 items (Heterobasidion irregulare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W4KJJ1_9AGAM	Uncharacterized protein. (1153 aa)
	W4KI89_9AGAM	Uncharacterized protein. (367 aa)
	W4K7K0_9AGAM	RNase H domain-containing protein. (383 aa)
	W4K2L2_9AGAM	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (714 aa)
	W4K2G1_9AGAM	RNase H domain-containing protein. (183 aa)
	W4KL48_9AGAM	Uncharacterized protein. (742 aa)

Your Current Organism:

Heterobasidion irregulare

NCBI taxonomy Id: 747525
Other names: H. irregulare TC 32-1, Heterobasidion irregulare TC 32-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4K2L2_9AGAM	W4KI89_9AGAM	W4K2L2	W4KI89	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.536
W4K2L2_9AGAM	W4KJJ1_9AGAM	W4K2L2	W4KJJ1	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.999
W4KI89_9AGAM	W4K2L2_9AGAM	W4KI89	W4K2L2	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.536
W4KJJ1_9AGAM	W4K2L2_9AGAM	W4KJJ1	W4K2L2	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999