12 items (Heterobasidion irregulare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W4JV79_9AGAM	Uncharacterized protein. (112 aa)
	W4JY35_9AGAM	TPR_MLP1_2 domain-containing protein. (145 aa)
	W4K9P9_9AGAM	Uncharacterized protein. (146 aa)
	W4K9M4_9AGAM	Uncharacterized protein. (886 aa)
	W4JNF4_9AGAM	Uncharacterized protein. (127 aa)
	W4K8E3_9AGAM	TPR_MLP1_2 domain-containing protein. (1856 aa)
	W4K2V6_9AGAM	Uncharacterized protein. (119 aa)
	W4K219_9AGAM	TPR_MLP1_2 domain-containing protein. (145 aa)
	W4JNG0_9AGAM	TPR_MLP1_2 domain-containing protein. (307 aa)
	W4JW14_9AGAM	Uncharacterized protein. (177 aa)
	W4JY24_9AGAM	Uncharacterized protein. (160 aa)
	W4JY71_9AGAM	Uncharacterized protein. (119 aa)

Your Current Organism:

Heterobasidion irregulare

NCBI taxonomy Id: 747525
Other names: H. irregulare TC 32-1, Heterobasidion irregulare TC 32-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4JNF4_9AGAM	W4JV79_9AGAM	W4JNF4	W4JV79	Uncharacterized protein.	Uncharacterized protein.	0.443
W4JNF4_9AGAM	W4JY71_9AGAM	W4JNF4	W4JY71	Uncharacterized protein.	Uncharacterized protein.	0.402
W4JNF4_9AGAM	W4K2V6_9AGAM	W4JNF4	W4K2V6	Uncharacterized protein.	Uncharacterized protein.	0.401
W4JV79_9AGAM	W4JNF4_9AGAM	W4JV79	W4JNF4	Uncharacterized protein.	Uncharacterized protein.	0.443
W4JV79_9AGAM	W4JY35_9AGAM	W4JV79	W4JY35	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.414
W4JW14_9AGAM	W4JY24_9AGAM	W4JW14	W4JY24	Uncharacterized protein.	Uncharacterized protein.	0.617
W4JY24_9AGAM	W4JW14_9AGAM	W4JY24	W4JW14	Uncharacterized protein.	Uncharacterized protein.	0.617
W4JY35_9AGAM	W4JV79_9AGAM	W4JY35	W4JV79	TPR_MLP1_2 domain-containing protein.	Uncharacterized protein.	0.414
W4JY35_9AGAM	W4JY71_9AGAM	W4JY35	W4JY71	TPR_MLP1_2 domain-containing protein.	Uncharacterized protein.	0.412
W4JY35_9AGAM	W4K2V6_9AGAM	W4JY35	W4K2V6	TPR_MLP1_2 domain-containing protein.	Uncharacterized protein.	0.415
W4JY71_9AGAM	W4JNF4_9AGAM	W4JY71	W4JNF4	Uncharacterized protein.	Uncharacterized protein.	0.402
W4JY71_9AGAM	W4JY35_9AGAM	W4JY71	W4JY35	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.412
W4K2V6_9AGAM	W4JNF4_9AGAM	W4K2V6	W4JNF4	Uncharacterized protein.	Uncharacterized protein.	0.401
W4K2V6_9AGAM	W4JY35_9AGAM	W4K2V6	W4JY35	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.415