5 items (Heterobasidion irregulare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W4K5V5_9AGAM	Uncharacterized protein. (3677 aa)
	W4JY11_9AGAM	Ubiquitin carboxyl-terminal hydrolase. (820 aa)
	W4K3N4_9AGAM	Uncharacterized protein. (394 aa)
	W4KIH7_9AGAM	Uncharacterized protein. (1320 aa)
	W4KKP8_9AGAM	Uncharacterized protein. (355 aa)

Your Current Organism:

Heterobasidion irregulare

NCBI taxonomy Id: 747525
Other names: H. irregulare TC 32-1, Heterobasidion irregulare TC 32-1

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4JY11_9AGAM	W4K3N4_9AGAM	W4JY11	W4K3N4	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.715
W4JY11_9AGAM	W4KKP8_9AGAM	W4JY11	W4KKP8	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.591
W4K3N4_9AGAM	W4JY11_9AGAM	W4K3N4	W4JY11	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.715
W4K3N4_9AGAM	W4KIH7_9AGAM	W4K3N4	W4KIH7	Uncharacterized protein.	Uncharacterized protein.	0.433
W4K3N4_9AGAM	W4KKP8_9AGAM	W4K3N4	W4KKP8	Uncharacterized protein.	Uncharacterized protein.	0.766
W4KIH7_9AGAM	W4K3N4_9AGAM	W4KIH7	W4K3N4	Uncharacterized protein.	Uncharacterized protein.	0.433
W4KIH7_9AGAM	W4KKP8_9AGAM	W4KIH7	W4KKP8	Uncharacterized protein.	Uncharacterized protein.	0.686
W4KKP8_9AGAM	W4JY11_9AGAM	W4KKP8	W4JY11	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.591
W4KKP8_9AGAM	W4K3N4_9AGAM	W4KKP8	W4K3N4	Uncharacterized protein.	Uncharacterized protein.	0.766
W4KKP8_9AGAM	W4KIH7_9AGAM	W4KKP8	W4KIH7	Uncharacterized protein.	Uncharacterized protein.	0.686