(36 nodes) Nucleotide excision repair network (Heterobasidion irregulare)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W4JNC0_9AGAM	ERCC4 domain-containing protein. (941 aa)
	W4JNX6_9AGAM	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2220 aa)
	W4JR14_9AGAM	Uncharacterized protein. (64 aa)
	W4JS47_9AGAM	Uncharacterized protein. (207 aa)
	W4JTW4_9AGAM	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	W4JUT8_9AGAM	RING-type domain-containing protein. (108 aa)
	W4JVB4_9AGAM	CBFD_NFYB_HMF domain-containing protein. (273 aa)
	W4JWK1_9AGAM	Uncharacterized protein. (108 aa)
	W4JY75_9AGAM	CULLIN_2 domain-containing protein; Belongs to the cullin family. (810 aa)
	W4JYU6_9AGAM	AAA domain-containing protein. (352 aa)
	W4K003_9AGAM	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (365 aa)
	W4K1J4_9AGAM	DNA polymerase. (989 aa)
	W4K3N4_9AGAM	Uncharacterized protein. (394 aa)
	W4K5F5_9AGAM	BSD domain-containing protein. (593 aa)
	W4K5S7_9AGAM	VWFA domain-containing protein. (397 aa)
	W4K6A4_9AGAM	Uncharacterized protein. (346 aa)
	W4K716_9AGAM	DNA ligase. (656 aa)
	W4K7S1_9AGAM	CPSF_A domain-containing protein. (1254 aa)
	W4K7W3_9AGAM	CBFD_NFYB_HMF domain-containing protein. (135 aa)
	W4K9A3_9AGAM	Uncharacterized protein. (948 aa)
	W4KAI4_9AGAM	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (473 aa)
	W4KAQ6_9AGAM	Uncharacterized protein. (858 aa)
	W4KBE9_9AGAM	AAA domain-containing protein. (358 aa)
	W4KBR1_9AGAM	Uncharacterized protein. (1160 aa)
	W4KCA9_9AGAM	Uncharacterized protein. (936 aa)
	W4KDG0_9AGAM	Uncharacterized protein. (449 aa)
	W4KGF2_9AGAM	BRCT domain-containing protein. (1676 aa)
	W4KI05_9AGAM	AAA domain-containing protein. (363 aa)
	W4KIL6_9AGAM	RING-type domain-containing protein. (396 aa)
	W4KJ92_9AGAM	Helicase ATP-binding domain-containing protein. (1328 aa)
	W4KJQ1_9AGAM	Uncharacterized protein. (510 aa)
	W4KKG5_9AGAM	Uncharacterized protein. (282 aa)
	W4KMZ6_9AGAM	DNA ligase. (830 aa)
	W4KNA9_9AGAM	CYCLIN domain-containing protein; Belongs to the cyclin family. (342 aa)
	W4KNX0_9AGAM	XPA_C domain-containing protein. (318 aa)
	W4KPT0_9AGAM	AAA domain-containing protein. (343 aa)

Your Current Organism:

Heterobasidion irregulare

NCBI taxonomy Id: 747525
Other names: H. irregulare TC 32-1, Heterobasidion irregulare TC 32-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4JNC0_9AGAM	W4JNX6_9AGAM	W4JNC0	W4JNX6	ERCC4 domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.683
W4JNC0_9AGAM	W4JS47_9AGAM	W4JNC0	W4JS47	ERCC4 domain-containing protein.	Uncharacterized protein.	0.999
W4JNC0_9AGAM	W4JTW4_9AGAM	W4JNC0	W4JTW4	ERCC4 domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.808
W4JNC0_9AGAM	W4JUT8_9AGAM	W4JNC0	W4JUT8	ERCC4 domain-containing protein.	RING-type domain-containing protein.	0.629
W4JNC0_9AGAM	W4JVB4_9AGAM	W4JNC0	W4JVB4	ERCC4 domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.498
W4JNC0_9AGAM	W4JY75_9AGAM	W4JNC0	W4JY75	ERCC4 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.712
W4JNC0_9AGAM	W4JYU6_9AGAM	W4JNC0	W4JYU6	ERCC4 domain-containing protein.	AAA domain-containing protein.	0.702
W4JNC0_9AGAM	W4K1J4_9AGAM	W4JNC0	W4K1J4	ERCC4 domain-containing protein.	DNA polymerase.	0.561
W4JNC0_9AGAM	W4K3N4_9AGAM	W4JNC0	W4K3N4	ERCC4 domain-containing protein.	Uncharacterized protein.	0.648
W4JNC0_9AGAM	W4K5F5_9AGAM	W4JNC0	W4K5F5	ERCC4 domain-containing protein.	BSD domain-containing protein.	0.670
W4JNC0_9AGAM	W4K5S7_9AGAM	W4JNC0	W4K5S7	ERCC4 domain-containing protein.	VWFA domain-containing protein.	0.660
W4JNC0_9AGAM	W4K6A4_9AGAM	W4JNC0	W4K6A4	ERCC4 domain-containing protein.	Uncharacterized protein.	0.626
W4JNC0_9AGAM	W4K7S1_9AGAM	W4JNC0	W4K7S1	ERCC4 domain-containing protein.	CPSF_A domain-containing protein.	0.759
W4JNC0_9AGAM	W4K9A3_9AGAM	W4JNC0	W4K9A3	ERCC4 domain-containing protein.	Uncharacterized protein.	0.610
W4JNC0_9AGAM	W4KAI4_9AGAM	W4JNC0	W4KAI4	ERCC4 domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.642
W4JNC0_9AGAM	W4KAQ6_9AGAM	W4JNC0	W4KAQ6	ERCC4 domain-containing protein.	Uncharacterized protein.	0.864
W4JNC0_9AGAM	W4KBE9_9AGAM	W4JNC0	W4KBE9	ERCC4 domain-containing protein.	AAA domain-containing protein.	0.703
W4JNC0_9AGAM	W4KBR1_9AGAM	W4JNC0	W4KBR1	ERCC4 domain-containing protein.	Uncharacterized protein.	0.902
W4JNC0_9AGAM	W4KCA9_9AGAM	W4JNC0	W4KCA9	ERCC4 domain-containing protein.	Uncharacterized protein.	0.736
W4JNC0_9AGAM	W4KGF2_9AGAM	W4JNC0	W4KGF2	ERCC4 domain-containing protein.	BRCT domain-containing protein.	0.815