46 items (Melampsora laricipopulina) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4R4S3_MELLP	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (454 aa)
	F4R4R7_MELLP	Uncharacterized protein. (72 aa)
	F4SA93_MELLP	DUF3591 domain-containing protein. (1119 aa)
	F4S9X8_MELLP	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1786 aa)
	F4S8G9_MELLP	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (122 aa)
	F4S6R3_MELLP	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
	F4S620_MELLP	RING-type domain-containing protein. (171 aa)
	F4S2F9_MELLP	S1 motif domain-containing protein. (172 aa)
	F4S238_MELLP	Uncharacterized protein. (70 aa)
	F4S221_MELLP	Acyl_transf_3 domain-containing protein. (431 aa)
	F4S1K7_MELLP	CDC73_C domain-containing protein. (407 aa)
	F4S137_MELLP	Uncharacterized protein. (316 aa)
	F4S115_MELLP	BTP domain-containing protein. (688 aa)
	F4RZ31_MELLP	RNA_pol_Rpb5_C domain-containing protein. (67 aa)
	F4RY48_MELLP	RPOLD domain-containing protein. (359 aa)
	F4RY07_MELLP	Uncharacterized protein. (63 aa)
	F4RWC7_MELLP	TFIID_20kDa domain-containing protein. (124 aa)
	F4RW68_MELLP	Acyl_transf_3 domain-containing protein. (473 aa)
	F4RUC3_MELLP	Acyl_transf_3 domain-containing protein. (492 aa)
	F4RU01_MELLP	TAFII28 domain-containing protein. (227 aa)
	F4RTH6_MELLP	RPOL4c domain-containing protein. (130 aa)
	F4RSU9_MELLP	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (700 aa)
	F4RST5_MELLP	DUF4211 domain-containing protein. (460 aa)
	F4RQS4_MELLP	Uncharacterized protein. (804 aa)
	F4RQE5_MELLP	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (310 aa)
	F4RMR2_MELLP	Uncharacterized protein. (456 aa)
	F4RMH4_MELLP	Uncharacterized protein. (1102 aa)
	F4RKY9_MELLP	Uncharacterized protein. (356 aa)
	F4RKX6_MELLP	HTH TFE/IIEalpha-type domain-containing protein. (478 aa)
	F4RKB9_MELLP	Uncharacterized protein. (180 aa)
	F4RJV1_MELLP	CYCLIN domain-containing protein; Belongs to the cyclin family. (314 aa)
	F4RJK6_MELLP	Uncharacterized protein. (187 aa)
	F4RI66_MELLP	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (455 aa)
	F4RHZ9_MELLP	Uncharacterized protein. (83 aa)
	F4RFP0_MELLP	RNA_pol_L_2 domain-containing protein. (159 aa)
	F4RF42_MELLP	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1257 aa)
	F4RDR3_MELLP	Acyl_transf_3 domain-containing protein. (488 aa)
	F4RD40_MELLP	TAF domain-containing protein. (562 aa)
	F4RCY2_MELLP	Uncharacterized protein. (482 aa)
	F4RBH3_MELLP	Uncharacterized protein. (454 aa)
	F4RB28_MELLP	Uncharacterized protein. (290 aa)
	F4R8Q1_MELLP	Uncharacterized protein. (67 aa)
	F4R5C8_MELLP	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (362 aa)
	F4R571_MELLP	RTR1-type domain-containing protein. (235 aa)
	F4R509_MELLP	Transcription initiation factor TFIID subunit 9. (216 aa)
	F4R508_MELLP	Plus3 domain-containing protein. (554 aa)

Your Current Organism:

Melampsora laricipopulina

NCBI taxonomy Id: 747676
Other names: M. larici-populina 98AG31, Melampsora larici-populina 98AG31, Melampsora laricis-populina 98AG31

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4R4R7_MELLP	F4R4S3_MELLP	F4R4R7	F4R4S3	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.969
F4R4R7_MELLP	F4R508_MELLP	F4R4R7	F4R508	Uncharacterized protein.	Plus3 domain-containing protein.	0.921
F4R4R7_MELLP	F4R509_MELLP	F4R4R7	F4R509	Uncharacterized protein.	Transcription initiation factor TFIID subunit 9.	0.810
F4R4R7_MELLP	F4R571_MELLP	F4R4R7	F4R571	Uncharacterized protein.	RTR1-type domain-containing protein.	0.966
F4R4R7_MELLP	F4R5C8_MELLP	F4R4R7	F4R5C8	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.813
F4R4R7_MELLP	F4R8Q1_MELLP	F4R4R7	F4R8Q1	Uncharacterized protein.	Uncharacterized protein.	0.999
F4R4R7_MELLP	F4RB28_MELLP	F4R4R7	F4RB28	Uncharacterized protein.	Uncharacterized protein.	0.836
F4R4R7_MELLP	F4RBH3_MELLP	F4R4R7	F4RBH3	Uncharacterized protein.	Uncharacterized protein.	0.906
F4R4R7_MELLP	F4RCY2_MELLP	F4R4R7	F4RCY2	Uncharacterized protein.	Uncharacterized protein.	0.850
F4R4R7_MELLP	F4RD40_MELLP	F4R4R7	F4RD40	Uncharacterized protein.	TAF domain-containing protein.	0.820
F4R4R7_MELLP	F4RDR3_MELLP	F4R4R7	F4RDR3	Uncharacterized protein.	Acyl_transf_3 domain-containing protein.	0.653
F4R4R7_MELLP	F4RF42_MELLP	F4R4R7	F4RF42	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
F4R4R7_MELLP	F4RFP0_MELLP	F4R4R7	F4RFP0	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
F4R4R7_MELLP	F4RHZ9_MELLP	F4R4R7	F4RHZ9	Uncharacterized protein.	Uncharacterized protein.	0.825
F4R4R7_MELLP	F4RI66_MELLP	F4R4R7	F4RI66	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.969
F4R4R7_MELLP	F4RJK6_MELLP	F4R4R7	F4RJK6	Uncharacterized protein.	Uncharacterized protein.	0.966
F4R4R7_MELLP	F4RJV1_MELLP	F4R4R7	F4RJV1	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.916
F4R4R7_MELLP	F4RKB9_MELLP	F4R4R7	F4RKB9	Uncharacterized protein.	Uncharacterized protein.	0.826
F4R4R7_MELLP	F4RKX6_MELLP	F4R4R7	F4RKX6	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.991
F4R4R7_MELLP	F4RKY9_MELLP	F4R4R7	F4RKY9	Uncharacterized protein.	Uncharacterized protein.	0.977