(7 nodes) Type 1 protein exporter network (Pseudogulbenkiania sp. NH8B)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NH8B_3820	Type I secretion system ATPase. (719 aa)
	msbA	Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (586 aa)
	NH8B_3553	Lipid ABC transporter, ATP-binding/permease protein MsbA. (489 aa)
	NH8B_2577	ABC transporter, ATP-binding/permease protein. (597 aa)
	NH8B_2191	ABC transporter, ATP-binding/permease protein. (577 aa)
	NH8B_1022	ABC transporter, ATP-binding/permease protein. (594 aa)
	NH8B_0065	ABC transporter, ATP-binding/permease protein. (618 aa)

Your Current Organism:

Pseudogulbenkiania sp. NH8B

NCBI taxonomy Id: 748280
Other names: P. sp. NH8B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NH8B_0065	NH8B_2577	NH8B_0065	NH8B_2577	ABC transporter, ATP-binding/permease protein.	ABC transporter, ATP-binding/permease protein.	0.688
NH8B_0065	NH8B_3553	NH8B_0065	NH8B_3553	ABC transporter, ATP-binding/permease protein.	Lipid ABC transporter, ATP-binding/permease protein MsbA.	0.715
NH8B_0065	NH8B_3820	NH8B_0065	NH8B_3820	ABC transporter, ATP-binding/permease protein.	Type I secretion system ATPase.	0.691
NH8B_1022	NH8B_2577	NH8B_1022	NH8B_2577	ABC transporter, ATP-binding/permease protein.	ABC transporter, ATP-binding/permease protein.	0.672
NH8B_1022	NH8B_3553	NH8B_1022	NH8B_3553	ABC transporter, ATP-binding/permease protein.	Lipid ABC transporter, ATP-binding/permease protein MsbA.	0.746
NH8B_1022	NH8B_3820	NH8B_1022	NH8B_3820	ABC transporter, ATP-binding/permease protein.	Type I secretion system ATPase.	0.691
NH8B_2191	NH8B_2577	NH8B_2191	NH8B_2577	ABC transporter, ATP-binding/permease protein.	ABC transporter, ATP-binding/permease protein.	0.679
NH8B_2191	NH8B_3553	NH8B_2191	NH8B_3553	ABC transporter, ATP-binding/permease protein.	Lipid ABC transporter, ATP-binding/permease protein MsbA.	0.769
NH8B_2191	NH8B_3820	NH8B_2191	NH8B_3820	ABC transporter, ATP-binding/permease protein.	Type I secretion system ATPase.	0.708
NH8B_2577	NH8B_0065	NH8B_2577	NH8B_0065	ABC transporter, ATP-binding/permease protein.	ABC transporter, ATP-binding/permease protein.	0.688
NH8B_2577	NH8B_1022	NH8B_2577	NH8B_1022	ABC transporter, ATP-binding/permease protein.	ABC transporter, ATP-binding/permease protein.	0.672
NH8B_2577	NH8B_2191	NH8B_2577	NH8B_2191	ABC transporter, ATP-binding/permease protein.	ABC transporter, ATP-binding/permease protein.	0.679
NH8B_2577	msbA	NH8B_2577	NH8B_3703	ABC transporter, ATP-binding/permease protein.	Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.691
NH8B_3553	NH8B_0065	NH8B_3553	NH8B_0065	Lipid ABC transporter, ATP-binding/permease protein MsbA.	ABC transporter, ATP-binding/permease protein.	0.715
NH8B_3553	NH8B_1022	NH8B_3553	NH8B_1022	Lipid ABC transporter, ATP-binding/permease protein MsbA.	ABC transporter, ATP-binding/permease protein.	0.746
NH8B_3553	NH8B_2191	NH8B_3553	NH8B_2191	Lipid ABC transporter, ATP-binding/permease protein MsbA.	ABC transporter, ATP-binding/permease protein.	0.769
NH8B_3553	msbA	NH8B_3553	NH8B_3703	Lipid ABC transporter, ATP-binding/permease protein MsbA.	Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.775
NH8B_3820	NH8B_0065	NH8B_3820	NH8B_0065	Type I secretion system ATPase.	ABC transporter, ATP-binding/permease protein.	0.691
NH8B_3820	NH8B_1022	NH8B_3820	NH8B_1022	Type I secretion system ATPase.	ABC transporter, ATP-binding/permease protein.	0.691
NH8B_3820	NH8B_2191	NH8B_3820	NH8B_2191	Type I secretion system ATPase.	ABC transporter, ATP-binding/permease protein.	0.708