(109 nodes) Mixed, incl. Small-subunit processome, and Positive regulation of rRNA processing network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000001710	RNA 3'-terminal phosphate cyclase (ATP). (334 aa)
	ENSSGRP00000005175	RNA 3'-terminal phosphate cyclase-like protein. (281 aa)
	ENSSGRP00000006700	annotation not available (365 aa)
	wdr46	U3 small nucleolar RNA-associated protein 7. (437 aa)
	ENSSGRP00000009028	annotation not available (293 aa)
	ENSSGRP00000010401	Deoxynucleotidyltransferase terminal-interacting protein 2-like isoform X1. (205 aa)
	LOC107592227	RRNA 2'-O-methyltransferase fibrillarin-like. (312 aa)
	ENSSGRP00000013069	UTP3 small subunit processome component. (440 aa)
	ENSSGRP00000013129	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae). (324 aa)
	ENSSGRP00000015598	WD repeat domain 36. (656 aa)
	ENSSGRP00000017321	U3 small nucleolar ribonucleoprotein protein LCP5. (332 aa)
	Pdcd11	RRNA biogenesis protein RRP5. (914 aa)
	dimt1	18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase. (330 aa)
	LOC107572361	Essential nuclear protein 1. (385 aa)
	LOC107583586	U3 small nucleolar RNA-associated protein 5. (691 aa)
	rrp9	U3 small nucleolar RNA-interacting protein 2 isoform X1. (471 aa)
	LOC107595005	U3 small nucleolar ribonucleoprotein protein IMP4-like. (291 aa)
	ENSSGRP00000026240	annotation not available (105 aa)
	ENSSGRP00000027102	RNA-binding protein PNO1. (251 aa)
	ENSSGRP00000028008	NOP14 nucleolar protein homolog (yeast). (555 aa)
	ENSSGRP00000031192	Nucleolar protein 56-like isoform X1. (541 aa)
	ENSSGRP00000031624	UTP6 small subunit processome component. (552 aa)
	ENSSGRP00000031897	Glomulin-like. (532 aa)
	ENSSGRP00000033381	RRNA 2'-O-methyltransferase fibrillarin-like. (337 aa)
	ENSSGRP00000034240	BMS1 ribosome biogenesis factor. (1122 aa)
	ENSSGRP00000034657	Nucleolar protein 6 (RNA-associated). (821 aa)
	ENSSGRP00000035354	KRI1 homolog. (716 aa)
	NOP14	Nucleolar protein 14. (797 aa)
	ENSSGRP00000038627	Nucleolar protein 6 (RNA-associated). (767 aa)
	LOC107569751	Essential nuclear protein 1. (425 aa)
	ENSSGRP00000041844	Protein AATF-like isoform X1. (529 aa)
	ENSSGRP00000042739	U3 small nucleolar RNA-associated protein 21. (745 aa)
	ENSSGRP00000043667	U3 small nucleolar RNA-associated protein 7. (428 aa)
	ENSSGRP00000044154	Glomulin, FKBP associated protein b. (450 aa)
	ENSSGRP00000044215	U3 small nucleolar RNA-associated protein 19. (439 aa)
	ENSSGRP00000044371	Melanocyte protein PMEL-like. (258 aa)
	caprin1	RNA cytidine acetyltransferase-like. (1027 aa)
	LOC107559694	U3 small nucleolar RNA-associated protein 15 homolog. (528 aa)
	ENSSGRP00000046341	annotation not available (55 aa)
	ENSSGRP00000047930	Ribosomal RNA processing 7 homolog A. (271 aa)
	LOC107595077	U3 small nucleolar ribonucleoprotein protein MPP10-like. (689 aa)
	ENSSGRP00000050862	Partner of NOB1 homolog. (247 aa)
	ltv1	Protein LTV1 homolog isoform X1. (469 aa)
	ENSSGRP00000052944	RNA binding motif protein 19. (897 aa)
	emg1	RRNA small subunit pseudouridine methyltransferase Nep1. (238 aa)
	LOC107583058	U3 small nucleolar RNA-associated protein 5. (673 aa)
	ENSSGRP00000058456	U3 small nucleolar RNA-associated protein 10. (1425 aa)
	LOC107562623	Nuclear receptor coactivator 6-like isoform X1. (2261 aa)
	nop58	Nucleolar protein 58 isoform X1. (548 aa)
	ENSSGRP00000060390	UTP23 small subunit processome component. (251 aa)
	ENSSGRP00000061315	LOW QUALITY PROTEIN: periodic tryptophan protein 2 homolog. (925 aa)
	ENSSGRP00000063011	EMG1 N1-specific pseudouridine methyltransferase. (131 aa)
	ENSSGRP00000063013	EMG1 N1-specific pseudouridine methyltransferase. (201 aa)
	LOC107600050	U3 small nucleolar RNA-associated protein 15 homolog. (476 aa)
	tbl3	U3 small nucleolar RNA-associated protein 13. (915 aa)
	LOC107599013	Deoxynucleotidyltransferase terminal-interacting protein 2-like isoform X1. (926 aa)
	ENSSGRP00000064194	NIN1 (RPN12) binding protein 1 homolog. (428 aa)
	ENSSGRP00000066233	annotation not available (682 aa)
	LOC107553989	U3 small nucleolar RNA-associated protein 4 homolog. (685 aa)
	Nob1	RNA-binding protein NOB1. (75 aa)
	ENSSGRP00000067518	SH2B adapter protein 2-like. (90 aa)
	ENSSGRP00000068059	Ribosomal RNA processing 12 homolog. (1254 aa)
	ENSSGRP00000071420	WD repeat domain 3. (833 aa)
	LOC107585992	U3 small nucleolar ribonucleoprotein protein MPP10-like isoform X1. (684 aa)
	LOC107568248	Protein KRI1 homolog isoform X1. (770 aa)
	rtca	RNA 3'-terminal phosphate cyclase (ATP). (370 aa)
	ENSSGRP00000074775	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (251 aa)
	ENSSGRP00000075789	Exosome component 10. (778 aa)
	LOC107554563	RNA cytidine acetyltransferase-like isoform X1. (1047 aa)
	LOC107590505	GRIP and coiled-coil domain-containing protein 1-like. (807 aa)
	utp6	U3 small nucleolar RNA-associated protein 6 homolog isoform X1. (597 aa)
	ENSSGRP00000080038	NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17). (837 aa)
	utp11	Probable U3 small nucleolar RNA-associated protein 11. (252 aa)
	LOC107557305	GRIP and coiled-coil domain-containing protein 1-like. (796 aa)
	LOC107572823	Pancreatic secretory granule membrane major glycoprotein GP2-like. (390 aa)
	ENSSGRP00000083790	annotation not available (223 aa)
	LOC107583899	U3 small nucleolar RNA-associated protein 4 homolog. (630 aa)
	ENSSGRP00000084572	Ribosome biogenesis protein ENP2. (656 aa)
	ENSSGRP00000085426	FCF1 rRNA-processing protein. (175 aa)
	ENSSGRP00000085722	Ribosome biogenesis protein ENP2. (576 aa)
	ENSSGRP00000085806	DEAH (Asp-Glu-Ala-His) box polypeptide 32b. (578 aa)
	ENSSGRP00000087253	Colorectal mutant cancer protein-like. (426 aa)
	utp23	U3 small nucleolar RNA-associated protein 23. (253 aa)
	LOC107585596	Pre-rRNA-processing protein TSR1 homolog. (835 aa)
	ENSSGRP00000090606	U3 small nucleolar ribonucleoprotein protein IMP4-like. (305 aa)
	ddx52	Probable ATP-dependent RNA helicase DDX52 isoform X1. (603 aa)
	Heatr1	U3 small nucleolar RNA-associated protein 10. (2153 aa)
	ENSSGRP00000092399	WD repeat domain 75. (796 aa)
	Bms1	Ribosome biogenesis protein BMS1 homolog. (1231 aa)
	ENSSGRP00000095040	Nucleolar protein 56-like. (496 aa)
	ENSSGRP00000096227	Ddb1 and cul4 associated factor 13. (351 aa)
	ENSSGRP00000096240	Ddb1 and cul4 associated factor 13. (165 aa)
	RRP7A	Putative ribosomal RNA-processing protein 7 homolog B. (143 aa)
	ENSSGRP00000097344	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32. (671 aa)
	LOC107588835	Periodic tryptophan protein 2 homolog. (987 aa)
	LOC107548794	U3 small nucleolar RNA-associated protein 19. (537 aa)
	ENSSGRP00000102036	WD repeat domain 3. (925 aa)
	ENSSGRP00000102732	Matrix metallopeptidase 15a. (234 aa)
	ENSSGRP00000103704	RNA 3'-terminal phosphate cyclase-like protein. (345 aa)
	mcc	Colorectal mutant cancer protein isoform X1. (998 aa)
	Wbscr27	Williams-Beuren syndrome chromosomal region 27 protein. (233 aa)
	dcaf13	DDB1- and CUL4-associated factor 13. (445 aa)
	LOC107592627	Pre-rRNA-processing protein TSR1 homolog isoform X1. (837 aa)
	ENSSGRP00000107996	annotation not available (65 aa)
	ENSSGRP00000108372	U3 small nucleolar ribonucleoprotein protein LCP5. (240 aa)
	ENSSGRP00000108987	Probable ATP-dependent RNA helicase DDX52. (504 aa)
	glmn	Glomulin. (592 aa)
	krr1	KRR1 small subunit processome component homolog isoform X1. (376 aa)
	fcf1	U3 small nucleolar RNA-associated protein 24. (211 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bms1	ENSSGRP00000001710	ENSSGRP00000094603	ENSSGRP00000001710	Ribosome biogenesis protein BMS1 homolog.	RNA 3'-terminal phosphate cyclase (ATP).	0.974
Bms1	ENSSGRP00000005175	ENSSGRP00000094603	ENSSGRP00000005175	Ribosome biogenesis protein BMS1 homolog.	RNA 3'-terminal phosphate cyclase-like protein.	0.998
Bms1	ENSSGRP00000006700	ENSSGRP00000094603	ENSSGRP00000006700	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.813
Bms1	ENSSGRP00000009028	ENSSGRP00000094603	ENSSGRP00000009028	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.927
Bms1	ENSSGRP00000010401	ENSSGRP00000094603	ENSSGRP00000010401	Ribosome biogenesis protein BMS1 homolog.	Deoxynucleotidyltransferase terminal-interacting protein 2-like isoform X1.	0.986
Bms1	ENSSGRP00000013069	ENSSGRP00000094603	ENSSGRP00000013069	Ribosome biogenesis protein BMS1 homolog.	UTP3 small subunit processome component.	0.999
Bms1	ENSSGRP00000013129	ENSSGRP00000094603	ENSSGRP00000013129	Ribosome biogenesis protein BMS1 homolog.	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).	0.974
Bms1	ENSSGRP00000015598	ENSSGRP00000094603	ENSSGRP00000015598	Ribosome biogenesis protein BMS1 homolog.	WD repeat domain 36.	0.999
Bms1	ENSSGRP00000017321	ENSSGRP00000094603	ENSSGRP00000017321	Ribosome biogenesis protein BMS1 homolog.	U3 small nucleolar ribonucleoprotein protein LCP5.	0.996
Bms1	ENSSGRP00000026240	ENSSGRP00000094603	ENSSGRP00000026240	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.998
Bms1	ENSSGRP00000027102	ENSSGRP00000094603	ENSSGRP00000027102	Ribosome biogenesis protein BMS1 homolog.	RNA-binding protein PNO1.	0.920
Bms1	ENSSGRP00000028008	ENSSGRP00000094603	ENSSGRP00000028008	Ribosome biogenesis protein BMS1 homolog.	NOP14 nucleolar protein homolog (yeast).	0.999
Bms1	ENSSGRP00000031192	ENSSGRP00000094603	ENSSGRP00000031192	Ribosome biogenesis protein BMS1 homolog.	Nucleolar protein 56-like isoform X1.	0.998
Bms1	ENSSGRP00000031624	ENSSGRP00000094603	ENSSGRP00000031624	Ribosome biogenesis protein BMS1 homolog.	UTP6 small subunit processome component.	0.997
Bms1	ENSSGRP00000031897	ENSSGRP00000094603	ENSSGRP00000031897	Ribosome biogenesis protein BMS1 homolog.	Glomulin-like.	0.990
Bms1	ENSSGRP00000033381	ENSSGRP00000094603	ENSSGRP00000033381	Ribosome biogenesis protein BMS1 homolog.	RRNA 2'-O-methyltransferase fibrillarin-like.	0.992
Bms1	ENSSGRP00000034657	ENSSGRP00000094603	ENSSGRP00000034657	Ribosome biogenesis protein BMS1 homolog.	Nucleolar protein 6 (RNA-associated).	0.998
Bms1	ENSSGRP00000035354	ENSSGRP00000094603	ENSSGRP00000035354	Ribosome biogenesis protein BMS1 homolog.	KRI1 homolog.	0.895
Bms1	ENSSGRP00000038627	ENSSGRP00000094603	ENSSGRP00000038627	Ribosome biogenesis protein BMS1 homolog.	Nucleolar protein 6 (RNA-associated).	0.998
Bms1	ENSSGRP00000041844	ENSSGRP00000094603	ENSSGRP00000041844	Ribosome biogenesis protein BMS1 homolog.	Protein AATF-like isoform X1.	0.999