(8 nodes) Mixed, incl. Pwp2p-containing subcomplex of 90S preribosome, and Utp14 protein network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107583586	U3 small nucleolar RNA-associated protein 5. (691 aa)
	ENSSGRP00000031624	UTP6 small subunit processome component. (552 aa)
	ENSSGRP00000041844	Protein AATF-like isoform X1. (529 aa)
	ENSSGRP00000042739	U3 small nucleolar RNA-associated protein 21. (745 aa)
	ENSSGRP00000066233	annotation not available (682 aa)
	LOC107583899	U3 small nucleolar RNA-associated protein 4 homolog. (630 aa)
	Bms1	Ribosome biogenesis protein BMS1 homolog. (1231 aa)
	ENSSGRP00000102036	WD repeat domain 3. (925 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bms1	ENSSGRP00000031624	ENSSGRP00000094603	ENSSGRP00000031624	Ribosome biogenesis protein BMS1 homolog.	UTP6 small subunit processome component.	0.997
Bms1	ENSSGRP00000041844	ENSSGRP00000094603	ENSSGRP00000041844	Ribosome biogenesis protein BMS1 homolog.	Protein AATF-like isoform X1.	0.999
Bms1	ENSSGRP00000042739	ENSSGRP00000094603	ENSSGRP00000042739	Ribosome biogenesis protein BMS1 homolog.	U3 small nucleolar RNA-associated protein 21.	0.999
Bms1	ENSSGRP00000066233	ENSSGRP00000094603	ENSSGRP00000066233	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.998
Bms1	ENSSGRP00000102036	ENSSGRP00000094603	ENSSGRP00000102036	Ribosome biogenesis protein BMS1 homolog.	WD repeat domain 3.	0.998
Bms1	LOC107583586	ENSSGRP00000094603	ENSSGRP00000022943	Ribosome biogenesis protein BMS1 homolog.	U3 small nucleolar RNA-associated protein 5.	0.999
Bms1	LOC107583899	ENSSGRP00000094603	ENSSGRP00000084061	Ribosome biogenesis protein BMS1 homolog.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
ENSSGRP00000031624	Bms1	ENSSGRP00000031624	ENSSGRP00000094603	UTP6 small subunit processome component.	Ribosome biogenesis protein BMS1 homolog.	0.997
ENSSGRP00000031624	ENSSGRP00000041844	ENSSGRP00000031624	ENSSGRP00000041844	UTP6 small subunit processome component.	Protein AATF-like isoform X1.	0.998
ENSSGRP00000031624	ENSSGRP00000042739	ENSSGRP00000031624	ENSSGRP00000042739	UTP6 small subunit processome component.	U3 small nucleolar RNA-associated protein 21.	0.999
ENSSGRP00000031624	ENSSGRP00000066233	ENSSGRP00000031624	ENSSGRP00000066233	UTP6 small subunit processome component.	annotation not available	0.997
ENSSGRP00000031624	ENSSGRP00000102036	ENSSGRP00000031624	ENSSGRP00000102036	UTP6 small subunit processome component.	WD repeat domain 3.	0.999
ENSSGRP00000031624	LOC107583586	ENSSGRP00000031624	ENSSGRP00000022943	UTP6 small subunit processome component.	U3 small nucleolar RNA-associated protein 5.	0.999
ENSSGRP00000031624	LOC107583899	ENSSGRP00000031624	ENSSGRP00000084061	UTP6 small subunit processome component.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
ENSSGRP00000041844	Bms1	ENSSGRP00000041844	ENSSGRP00000094603	Protein AATF-like isoform X1.	Ribosome biogenesis protein BMS1 homolog.	0.999
ENSSGRP00000041844	ENSSGRP00000031624	ENSSGRP00000041844	ENSSGRP00000031624	Protein AATF-like isoform X1.	UTP6 small subunit processome component.	0.998
ENSSGRP00000041844	ENSSGRP00000042739	ENSSGRP00000041844	ENSSGRP00000042739	Protein AATF-like isoform X1.	U3 small nucleolar RNA-associated protein 21.	0.997
ENSSGRP00000041844	ENSSGRP00000066233	ENSSGRP00000041844	ENSSGRP00000066233	Protein AATF-like isoform X1.	annotation not available	0.999
ENSSGRP00000041844	ENSSGRP00000102036	ENSSGRP00000041844	ENSSGRP00000102036	Protein AATF-like isoform X1.	WD repeat domain 3.	0.998
ENSSGRP00000041844	LOC107583586	ENSSGRP00000041844	ENSSGRP00000022943	Protein AATF-like isoform X1.	U3 small nucleolar RNA-associated protein 5.	0.999