(15 nodes) Preribosome, small subunit precursor, and PIN domain of ribonuclease network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000009028	annotation not available (293 aa)
	ENSSGRP00000013129	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae). (324 aa)
	dimt1	18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase. (330 aa)
	LOC107572361	Essential nuclear protein 1. (385 aa)
	ENSSGRP00000027102	RNA-binding protein PNO1. (251 aa)
	LOC107569751	Essential nuclear protein 1. (425 aa)
	ENSSGRP00000046341	annotation not available (55 aa)
	ENSSGRP00000050862	Partner of NOB1 homolog. (247 aa)
	ltv1	Protein LTV1 homolog isoform X1. (469 aa)
	ENSSGRP00000064194	NIN1 (RPN12) binding protein 1 homolog. (428 aa)
	Nob1	RNA-binding protein NOB1. (75 aa)
	ENSSGRP00000067518	SH2B adapter protein 2-like. (90 aa)
	ENSSGRP00000083790	annotation not available (223 aa)
	LOC107585596	Pre-rRNA-processing protein TSR1 homolog. (835 aa)
	LOC107592627	Pre-rRNA-processing protein TSR1 homolog isoform X1. (837 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000009028	ENSSGRP00000013129	ENSSGRP00000009028	ENSSGRP00000013129	annotation not available	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).	0.982
ENSSGRP00000009028	ENSSGRP00000027102	ENSSGRP00000009028	ENSSGRP00000027102	annotation not available	RNA-binding protein PNO1.	0.976
ENSSGRP00000009028	ENSSGRP00000046341	ENSSGRP00000009028	ENSSGRP00000046341	annotation not available	annotation not available	0.999
ENSSGRP00000009028	ENSSGRP00000050862	ENSSGRP00000009028	ENSSGRP00000050862	annotation not available	Partner of NOB1 homolog.	0.976
ENSSGRP00000009028	ENSSGRP00000064194	ENSSGRP00000009028	ENSSGRP00000064194	annotation not available	NIN1 (RPN12) binding protein 1 homolog.	0.999
ENSSGRP00000009028	ENSSGRP00000067518	ENSSGRP00000009028	ENSSGRP00000067518	annotation not available	SH2B adapter protein 2-like.	0.990
ENSSGRP00000009028	ENSSGRP00000083790	ENSSGRP00000009028	ENSSGRP00000083790	annotation not available	annotation not available	0.965
ENSSGRP00000009028	LOC107569751	ENSSGRP00000009028	ENSSGRP00000039980	annotation not available	Essential nuclear protein 1.	0.999
ENSSGRP00000009028	LOC107572361	ENSSGRP00000009028	ENSSGRP00000022478	annotation not available	Essential nuclear protein 1.	0.999
ENSSGRP00000009028	LOC107585596	ENSSGRP00000009028	ENSSGRP00000089229	annotation not available	Pre-rRNA-processing protein TSR1 homolog.	0.999
ENSSGRP00000009028	LOC107592627	ENSSGRP00000009028	ENSSGRP00000106528	annotation not available	Pre-rRNA-processing protein TSR1 homolog isoform X1.	0.999
ENSSGRP00000009028	Nob1	ENSSGRP00000009028	ENSSGRP00000067511	annotation not available	RNA-binding protein NOB1.	0.999
ENSSGRP00000009028	dimt1	ENSSGRP00000009028	ENSSGRP00000020627	annotation not available	18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase.	0.982
ENSSGRP00000013129	ENSSGRP00000009028	ENSSGRP00000013129	ENSSGRP00000009028	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).	annotation not available	0.982
ENSSGRP00000013129	ENSSGRP00000027102	ENSSGRP00000013129	ENSSGRP00000027102	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).	RNA-binding protein PNO1.	0.918
ENSSGRP00000013129	ENSSGRP00000046341	ENSSGRP00000013129	ENSSGRP00000046341	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).	annotation not available	0.993
ENSSGRP00000013129	ENSSGRP00000050862	ENSSGRP00000013129	ENSSGRP00000050862	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).	Partner of NOB1 homolog.	0.918
ENSSGRP00000013129	ENSSGRP00000064194	ENSSGRP00000013129	ENSSGRP00000064194	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).	NIN1 (RPN12) binding protein 1 homolog.	0.953
ENSSGRP00000013129	ENSSGRP00000067518	ENSSGRP00000013129	ENSSGRP00000067518	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).	SH2B adapter protein 2-like.	0.963
ENSSGRP00000013129	ENSSGRP00000083790	ENSSGRP00000013129	ENSSGRP00000083790	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae).	annotation not available	0.797